Locus 93

Sequence ID X_DroMel_CAF1
Location 375,925 – 376,045
Length 120
Max. P 0.557156
window123

overview

Window 3

Location 375,925 – 376,045
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -55.47
Consensus MFE -38.44
Energy contribution -39.67
Covariance contribution 1.23
Combinations/Pair 1.09
Mean z-score -1.60
Structure conservation index 0.69
SVM decision value 0.05
SVM RNA-class probability 0.557156
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 375925 120 - 22224390
UACCGGAGCUGGCGGCGGAGUAGACACACAGGCACAGCUAAUGCAGAGUGCCGCUGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCGCUCCCGUACAGAAUGCAGCCGCCGUGGC
..(((....((((((((((((..((.....(((((.((....))...)))))(((((....))))).))((((((..(....)..))))))))))).(((.....))).)))))))))). ( -55.90)
>DroVir_CAF1 12643 114 - 1
CACGGGCGCCACCGGC---GUGGAUACACAGGCGCAGCUAAUGCAGAGCGCUGCCGCGGCGGCUGCUGUUGCCGCAACAAAUG---CGGCUGCGCCCGUGCAGAAUGCAGCGGCCGUUGC
(((((((((..(((((---(((....))).(((((.((....))...))))))))((((((((....))))))))........---.))..)))))))))......(((((....))))) ( -60.50)
>DroEre_CAF1 9703 120 - 1
CACCGGAGCUGGCGGCGGAGUGGACACACAGGCACAGCUAAUGCAGAGUGCAGCGGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCUCGCCCGUACAGAACGCAGCCGCCGUGGC
.......((((.((((((.(((..(..((.(((...((....)).(((.((.((.((.(((((....)))))(....)....)).)).)))))))).))...)..)))..)))))))))) ( -50.00)
>consensus
CACCGGAGCUGGCGGCGGAGUGGACACACAGGCACAGCUAAUGCAGAGUGCAGCCGCAGCCGCAGCAGUGGCGGCAACAAACGCGGCCGCCGCGCCCGUACAGAAUGCAGCCGCCGUGGC
.......((((.((((((.(((....)))..((...((....))...((((.((.((....)).)).((((((((..(....)..))))))))....)))).....))..)))))))))) (-38.44 = -39.67 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:05 2006