Locus 927

Sequence ID X_DroMel_CAF1
Location 2,588,548 – 2,588,656
Length 108
Max. P 0.948873
window1511

overview

Window 1

Location 2,588,548 – 2,588,656
Length 108
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 69.32
Mean single sequence MFE -31.28
Consensus MFE -11.27
Energy contribution -12.12
Covariance contribution 0.85
Combinations/Pair 1.26
Mean z-score -2.13
Structure conservation index 0.36
SVM decision value 1.39
SVM RNA-class probability 0.948873
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2588548 108 + 22224390
CCUUUGACCAACCAC-------CAAGCCACUGUG---C-CUCUGGUCACUUCCAAGCUGAUGUGCCUGGCUAGCUAUUUUGAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAUCA
...............-------...((((..(((---(-(...)).))).((((.(((((((((..((((..(((......))))))).......)))))))))))))...)))).... ( -32.10)
>DroSec_CAF1 1873 108 + 1
CCUUUAGCCAACCUC-------CAAGCCACUGUG---C-CUCUGGCCAUUUCCAAGCUGCUGUGCCUGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAACA
......(((((..((-------(..((((.....---.-...))))........(((((.((((..((((..(((......))))))).......)))).))))))))..))))).... ( -30.50)
>DroSim_CAF1 3274 108 + 1
CCUUUAGUCAACCUC-------CAAGCCCAUGUG---C-CUCUGGCCAUUUCCAAGCUGCUGUGCCCGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAACA
......(((((..((-------((.((..(((((---.-...((((.((((...((((((((....)))).)))).....)))))))).......)))))..))))))..))))).... ( -30.10)
>DroEre_CAF1 3814 117 + 1
CCUCUAGUCGCGCACCCCUAUUUAGUGAC--GCACAACACUGGGGCAAUUUUCAAGCUUCUGUGUCUGGCUAGCUGUUGUCAGUGCCAUCACUAACGGCUCAGCUGGCCCUUCGCAUCA
......(((((.............)))))--((...((((.(((((.........))))).))))..(((((((((((((.((((....)))).)))))..))))))))....)).... ( -38.32)
>DroYak_CAF1 4648 105 + 1
CCACCAGUCACAUAAGCGCCUUUAUGGACCUGUACAAC-CUUUGGCUAUUUCCAAG-------------CUAGCUCUUUGCAGUGCCAGCACUAAUGGAUCAGCUGAGUUUUGACAUCA
......(((.((((((....))))))))).(((.(((.-.((..(((...((((..-------------...((.....))((((....))))..))))..)))..))..))))))... ( -25.40)
>consensus
CCUUUAGUCAACCAC_______CAAGCCCCUGUG___C_CUCUGGCCAUUUCCAAGCUGCUGUGCCUGGCUAGCUAUUUUAAGUGCCACCACUAACGCAUCAGCUGGACUUUGGCAUCA
......((((.........................................(((.((......)).)))((((((......((((....))))........))))))....)))).... (-11.27 = -12.12 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006