| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,567,966 – 2,568,057 |
| Length | 91 |
| Max. P | 0.588593 |
| Location | 2,567,966 – 2,568,057 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Mean single sequence MFE | -33.45 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.10 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2567966 91 + 22224390 ACGCGAC----UCCUU----UUGCGUGCUACAGCAAGCCCUGCAUCUCGUUCAUGAACUGCAGAUAGGCGUCAUCCUUGGUGGGCGGCUUGCUGUGCGC ((((((.----.....----))))))((.(((((((((((((((..(((....)))..)))))....((.((((.....)))))))))))))))))).. ( -39.00) >DroVir_CAF1 17205 86 + 1 AGAUAGC-------------GGCUGUGCUACAGCAGACCCUGCAUCUCGUUCAUGAACUGCAGGUAGGCGUCAUCCUUCGUGGGUGGCUUCUUGUGUGC ...((((-------------(....)))))..(((.((((((((..(((....)))..)))))).(((.(((((((.....))))))).))).)).))) ( -28.80) >DroGri_CAF1 4014 83 + 1 AAGUAGC-------------UUCUGUGCUACAACAGACCCUGCAUUUCGUUCAUGAACUGCAGGUAGGCAUCGUCUUUAGUGGGUGGCU---UGUGCGC ..(((((-------------......))))).......((((((.((((....)))).))))))...((((.(((..........))).---.)))).. ( -24.20) >DroYak_CAF1 2899 91 + 1 ACACGAC----UCCUU----GCGAGUGCUACAGCAAGCCCUGCAUCUCGUUCAUGAACUGCAGAUAGGCGUCGUCCUUGGUGGGCGGCUUGCUGUGCGC .....((----((...----..))))((.(((((((((((((((..(((....)))..)))))...)))(((((((.....)))))))))))))))).. ( -37.50) >DroMoj_CAF1 3971 83 + 1 AGGCGGC-------------UGCCGUGCUACAGCAGGCCCUGCAUCUCGUUCAUGAACUGCAGGUAGGCGUCGUCCUUGGUGGGCGGCU---UGUGGGU .(((...-------------.)))...(((((((..(((.((((..(((....)))..)))))))..))(((((((.....))))))).---))))).. ( -33.70) >DroAna_CAF1 5163 98 + 1 -CGCGUCCAGGUCCUCCAGGACGAGGGCUACAACAGGCCCUGCAUUUCGUUCAUGAACUGCAGAUAGGCGUCGUCCUUGGUGGGUGGCUUGCUGUGUCC -.(((.(((..(((.((((((((((((((......)))))((((.((((....)))).))))........)))))).))).))))))..)))....... ( -37.50) >consensus ACGCGGC_____________UCCAGUGCUACAGCAGGCCCUGCAUCUCGUUCAUGAACUGCAGAUAGGCGUCGUCCUUGGUGGGCGGCUUGCUGUGCGC ........................((((.(((....((((((((..(((....)))..)))))...)))(((((((.....)))))))....))))))) (-21.26 = -21.10 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:20 2006