| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,561,245 – 2,561,365 |
| Length | 120 |
| Max. P | 0.518494 |
| Location | 2,561,245 – 2,561,365 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -44.95 |
| Consensus MFE | -25.75 |
| Energy contribution | -25.37 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2561245 120 + 22224390 CUGACUCGCGAGGAGUUCGAUCUGUUGCACGCCAAGGUGCAACACUUCGCGGACGACUCACAGGCCUCGCUGUCGCUUCACAAGCUAGUCACGCAGACCAGCGAGAGCAACGUCAGCGUA (((((..(.(((..(((((...((((((((......)))))))).....)))))..))).)..(((((((((..(((.....)))..(((.....)))))))))).))...))))).... ( -49.00) >DroVir_CAF1 361 120 + 1 CUGACGCGUGAGGAAUUCGAGCUGCUCCAGGCAAAAGGUCAGCAUUUUGCCGAUGACUCGCAGGCUUCGCUGUCGCUACACAAACUGGUCACGCAGACCAGCGAGAAUUGUGUCAGCGUG ..((((.((((((..(.((((...(....(((((((........)))))))...).)))).)..))))))))))(((((((((.((((((.....))))))......)))))).)))... ( -42.90) >DroGri_CAF1 244 120 + 1 AUGACACGCGAGGAGUUUGAUCUGUUGCAGGCAAAGGUACAGCACUUUGCGGACGAUUCGCAAGCAUCGCUAUCGCUGCACAAGCUGGUCACGCAGACCAGCGAGAAUUGCGUCAGCGUC .....((((((.((((((....(((.((((((((((........))))))((.((((.(....).))))))....))))))).(((((((.....)))))))..))))).).)).)))). ( -43.90) >DroWil_CAF1 388 120 + 1 UUGAUCCGCGAGGAAUUCGACCUCCUACAUGCAAAGGUCCAGCACUUUGCGGAUGAUUCGCAGGCUUCGCUUUCGCUGCACAAGCUCGUCACCCAGACUAGUGAGACCAAUAUAUGCGUG .(.((((((((((..((.(((((...........))))).))..)))))))))).)..((((((..(((((...(((.....)))..(((.....))).)))))..))......)))).. ( -34.90) >DroMoj_CAF1 372 120 + 1 CUGACGCGCGAGGAGUUCGAACUGCUGCAGGCCAAGGUGCAGCAUUUCGCCGACGACUCACAAGCUUCCCUAUCGCUGCACAAGCUGGUCACGCAGACCAGCGAAAGCUGUGUCAGUGUG ((((((((((((..(((((((.(((((((........))))))).))))..)))..)))...(((.........)))))....(((((((.....))))))).......))))))).... ( -49.40) >DroAna_CAF1 356 120 + 1 CUGACGCGCGAGGAGUUCGACCUGCUGCAGGCCAAGGUCCAGCACUUUGCCGACGACUCGCAAGCCUCCCUCUCGCUCCACAAACUGGUCACCCAGACGAGCGAGAGCAACGUCAGUGUG ((((((.(((((..((((((..(((((..(((....))))))))..)))..)))..)))))........(((((((((......((((....))))..)))))))))...)))))).... ( -49.60) >consensus CUGACGCGCGAGGAGUUCGACCUGCUGCAGGCAAAGGUCCAGCACUUUGCCGACGACUCGCAAGCUUCGCUAUCGCUGCACAAGCUGGUCACGCAGACCAGCGAGAGCAACGUCAGCGUG (((((..(((((..((((((..(((((...((....)).)))))..)))..)))..)))))...........((((((.........(((.....))))))))).......))))).... (-25.75 = -25.37 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:17 2006