| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,561,098 – 2,561,205 |
| Length | 107 |
| Max. P | 0.732830 |
| Location | 2,561,098 – 2,561,205 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.84 |
| Mean single sequence MFE | -24.66 |
| Consensus MFE | -17.43 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2561098 107 + 22224390 ACACCAAGGAUA-ACACAUUAACUGAUAAACAA-CUCCCCCUCAUUUGACAGUGCUCUCAUGCAGAUUGUGCGCGACCAGUGUAAGAUCCUGCAGGCAGCUCUGCCCCA .......((...-.....((((.(((.......-.......))).))))(((.(((.((.((((((((.(((((.....))))).))).))))))).))).)))..)). ( -23.74) >DroSec_CAF1 223 107 + 1 ACACCAAGGAUA-ACACAUUAACUGAUAAACAA-CUCCCCCUCAUUUGACAGUGCUCUCAUGCAGAUCGUACGCGACCAGUGUAAGAUCCUGCAGGCAGCUCUGCCCCA .......((...-.....((((.(((.......-.......))).))))(((.(((.((.((((((((.(((((.....))))).))).))))))).))).)))..)). ( -25.44) >DroSim_CAF1 232 107 + 1 ACACCAAGGAUA-ACACAUUAACUGAUAAAGAA-CUCCCCCUCAUUUGACAGUGCUCUCAUGCAGAUCGUGCGCGACCAGUGUAAGAUCCUGCAGGCAGCUCUGCCCCA .......((...-........((((.((((((.-.......)).)))).)))).......((((((((.(((((.....))))).))).)))))((((....)))))). ( -26.50) >DroYak_CAF1 229 108 + 1 CCAACAAGGAGA-ACACAUUAAUUGAUAACCAUCCUCCCCCCAAAUUGGCAGUGCUCUCAUGCAGAUUGUUCGCGACCAGUGUAAAAUUCUGCAGGCAGCUCUGCCACA .......((((.-.....................))))........((((((.(((.((.((((((...(((((.....))).))...)))))))).))).)))))).. ( -30.55) >DroMoj_CAF1 228 104 + 1 UCAUUAUUGUUGUCUACAUUGAUU---AAAC-U-CUUUGUCUACGUUCACAGCGCGCUCAUGCAAAUUGUUCGCGCCCAGUCACGAAUCCUGCAAGCGGCUCUGCCCCA ...........((..(((..((..---....-)-)..)))..))(..((.(((.((((..((((....(((((.(......).)))))..))))))))))).))..).. ( -19.60) >DroAna_CAF1 221 95 + 1 --AUUAAGGA----CUCUGUAG-UCUUAAAC----UCUCC--U-AUUUCCAGUGCCCUGAUGCAAAUAGUGCGCGCCCAGUGCCGGAUCCUGCAGGCGGCUCUGCCCCA --....((((----((....))-))))....----.....--.-.....(((.(((..(.((((.....)))))(((...(((.(....).))))))))).)))..... ( -22.10) >consensus ACACCAAGGAUA_ACACAUUAACUGAUAAACAA_CUCCCCCUCAUUUGACAGUGCUCUCAUGCAGAUUGUGCGCGACCAGUGUAAGAUCCUGCAGGCAGCUCUGCCCCA .................................................(((.(((....((((((((.(((((.....))))).))).)))))...))).)))..... (-17.43 = -17.82 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:16 2006