Locus 918

Sequence ID X_DroMel_CAF1
Location 2,560,038 – 2,560,134
Length 96
Max. P 0.976832
window1498

overview

Window 8

Location 2,560,038 – 2,560,134
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 72.93
Mean single sequence MFE -28.20
Consensus MFE -8.19
Energy contribution -8.71
Covariance contribution 0.52
Combinations/Pair 1.23
Mean z-score -2.21
Structure conservation index 0.29
SVM decision value 1.78
SVM RNA-class probability 0.976832
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2560038 96 - 22224390
CACGCCAUGGGCGUAGCUUGCUUUAAAAUGGGGAUCCAUCCCCCAGGAGCAUAUGUAAGGUGUAUUUAC--UUUACUGAAAUGCACAAUGCACUUUUA
.(((((...)))))....((((((....(((((.......)))))))))))..((((..((((((((.(--......)))))))))..))))...... ( -29.60)
>DroSec_CAF1 2057 96 - 1
CAGGACAUGGGCGUAGUUUGCUAUAUGAUGGGGGUCCAUCCCCCAGAAGCAUAUGUAAGCUAUAUUUAC--UUUACUGAAAUUCACAAAGCACUUUUA
(((....((((..((((((((.(((((.((((((.....))))))....)))))))))))))..)))).--....))).................... ( -28.90)
>DroSim_CAF1 4111 96 - 1
CAGGCCAUGGGCGUAGUUUGCUAUAUGAUGGGGGUCCAUCCCCCAGAAGCAUAUGUAAGCUAUAUUUAC--UUUACUGAAAUGCACAAUGCAGCUCUA
........(((((((((((((.(((((.((((((.....))))))....))))))))))))))......--..........(((.....))))))).. ( -33.90)
>DroEre_CAF1 2248 94 - 1
CGGGCCAUGGGCGU-GCAUGGUAUAGAAAGGGGAU-UUUCCCCCAAGCGCAUAUUUAAGGUGUAGGUAU--UUUAGUGAAACACUCCAUGCGCCUUUG
.(((((((((..((-((.(((.........(((..-...)))))).))))........(((((...(((--....)))..)))))))))).))))... ( -28.80)
>DroYak_CAF1 3600 92 - 1
CAGGCCAUGGGCGUAGCCUGGUAUAGAAAAGGGAUAUUUCGCCCGAGAACAUAUUCAAGGAGUAUUUAUGUUUAAGUGAAAUAUG------GAGUAUU
(((((.((....)).))))).............(((((((((....(((((((.............)))))))..))))))))).------....... ( -19.82)
>consensus
CAGGCCAUGGGCGUAGCUUGCUAUAGAAUGGGGAUCCAUCCCCCAGGAGCAUAUGUAAGGUGUAUUUAC__UUUACUGAAAUACACAAUGCACCUUUA
...(((...)))....(((((.......(((((.......))))).........)))))....................................... ( -8.19 =  -8.71 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:12 2006