| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,556,885 – 2,556,986 |
| Length | 101 |
| Max. P | 0.990175 |
| Location | 2,556,885 – 2,556,986 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -16.59 |
| Energy contribution | -16.70 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.83 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2556885 101 + 22224390 GUACCACACU--UAAUUUAAAUCAAUACUCUCUUCUGUAGCCAUCGCAACCGCAUCACUUCGCAGCCAAUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCUA ..........--.........................((((((((((....))...........((((...(((((((...)))).))).)))).)))))))) ( -21.10) >DroSim_CAF1 1072 85 + 1 GUA------------------UCAAUACUCUCUUCUGCAGCCAUCGCAACCGCAUCCAUUCACAGCCAAUGAUGCUUAUAUUAAGUCUUCUGGCUGAUGGCUA ...------------------.................(((((((((....))..........(((((..((.(((((...)))))..)))))))))))))). ( -21.60) >DroYak_CAF1 367 99 + 1 GUACCACACCUGUAACUUUAAUCAAUACUCUCAUUCGGAGCCAUCGC----GCAUCCGUUCGCAACCACUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCAU .......................................((((((.(----((....(....).....(..(((((((...)))).)))..)))))))))).. ( -17.00) >consensus GUACCACAC___UAA_UU_AAUCAAUACUCUCUUCUGCAGCCAUCGCAACCGCAUCCAUUCGCAGCCAAUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCUA .......................................((((((((....))...........((((..((..((((...))))..)).)))).)))))).. (-16.59 = -16.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006