Locus 915

Sequence ID X_DroMel_CAF1
Location 2,555,525 – 2,555,633
Length 108
Max. P 0.697601
window1493

overview

Window 3

Location 2,555,525 – 2,555,633
Length 108
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 75.41
Mean single sequence MFE -22.88
Consensus MFE -11.04
Energy contribution -12.88
Covariance contribution 1.84
Combinations/Pair 1.16
Mean z-score -1.85
Structure conservation index 0.48
SVM decision value 0.34
SVM RNA-class probability 0.697601
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2555525 108 + 22224390
CUACUUCAGACCCACAUU--------ACCAUUGGCUACGUAAAUCAUGGCACGACCAUAGAGAAACGUAUACUUCUAUUGUUGGUCAAUGCUAUCUACCUUCUGUAGUCGCUUUAU
..................--------......(((((((......((((((.(((((...((((........)))).....)))))..))))))........)))))))....... ( -21.44)
>DroSec_CAF1 11302 105 + 1
CCACUUCA---CCACAUU--------ACCAUUGGCUACGUAAACAAUGGCACGACCAUAGAGAAAAGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU
........---.......--------......(((((((......((((((.(((((.....(((((....))))).....)))))..))))))........)))))))....... ( -23.74)
>DroSim_CAF1 24880 105 + 1
CUACUUCA---UCACAUU--------ACCAUUGGCUACGUAAACCAUGGCACGACCAUAGAGAAAAGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU
........---.......--------......(((((((......((((((.(((((.....(((((....))))).....)))))..))))))........)))))))....... ( -23.74)
>DroEre_CAF1 11186 113 + 1
UUACUUCG---CCACAUUAUCACAUUCGCAUUGGUUGCGGAAAUCUUGGCAAGACCAUUGCAAAACGUAUGGUUUUAUUGUUGGUCAAUGCUAUCUUUUCAAAAUUUGCACUUUAU
.......(---(..............((((.....))))((((...(((((.(((((....(((((.....))))).....)))))..)))))...)))).......))....... ( -23.00)
>DroYak_CAF1 11282 97 + 1
UUACUUUA---CCA----------------UAGCUGGCGGAAAUCUUGGCACGACCAUAAUAAAACGUAUAGUUUUAUUGUUGCUCCAUGAUAUCUACUCGUUGUAGUCGUUUUAU
.......(---(.(----------------((((.((..((.(((.(((..((((...((((((((.....))))))))))))..))).))).))..)).))))).))........ ( -22.50)
>consensus
CUACUUCA___CCACAUU________ACCAUUGGCUACGUAAAUCAUGGCACGACCAUAGAGAAACGUAUACUUUUAUUGUUGGUCAAUGCUAUCUACCUUUUGUAGUCGCUUUAU
................................(((((((......((((((.((((((((.((((.......)))).))).)))))..))))))........)))))))....... (-11.04 = -12.88 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006