| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,551,639 – 2,551,756 |
| Length | 117 |
| Max. P | 0.535031 |
| Location | 2,551,639 – 2,551,756 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -45.80 |
| Consensus MFE | -27.22 |
| Energy contribution | -29.95 |
| Covariance contribution | 2.73 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2551639 117 + 22224390 CUCUCCAUGGCACGCGAGAAGGGCUUUUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCGGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCGAGGGUGUCGUUCAUGCCGAACUUC .......(((((.((((...((((.....((....---)).)))).))))..((.((((((((((((((((..(((.....)))..)))))))))))))))).))....)))))...... ( -58.80) >DroSec_CAF1 7429 117 + 1 CUCUCCAUAGCCCGCGAGAAGGUCUUCUAGCCACC---GCUGCCCAUCGCACCACCGCCCUCGGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCGAGGGUGUCGUUCAUGCCGAACUUC .............((((...(((.....(((....---))))))..)))).....((((((((((((((((..(((.....)))..))))))))))))))))..((((.....))))... ( -49.10) >DroEre_CAF1 7244 117 + 1 CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUC .......((((..((((...((((.....((....---)).)))).))))..((.((((((..((((((((..(((.....)))..))))))))..)))))).)).....))))...... ( -46.90) >DroYak_CAF1 7300 117 + 1 CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC---GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCCCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUU .......((((..((((...((((.....((....---)).)))).))))..((.((((((..((((((((..(((.....)))..))))))))..)))))).)).....))))...... ( -46.90) >DroMoj_CAF1 23556 111 + 1 CUAUCCAUGGCACGGGAGAAGGGCUUGGCGCUGCC---GCUG------GCGCCGCCGCCGCCAGAUUCAUUCGCGUCGCGCACAUAGAUCGGGCCCAGCUUUUCGUUCAUGCCAAAUUUC .......(((((.(((.((((((((.((((.((((---...)------))).))))...(((.(((..((..(((...)))..))..))).)))..)))))))).))).)))))...... ( -40.40) >DroAna_CAF1 7536 120 + 1 CUCUCCAUGGCCCUCGAGAAGGGCUUCUUGCCGCCACCGGCUCCCAGCGAACCCCCACCCUCUGUCUCGUCAGCAUCCCGCACAUAGAUGGGACCCAGGCUCGGAUUCAUGCCAAACUUC .......(((((((.....)))(((....((((....))))....)))(((.((....(((..((((((((.((.....)).....))))))))..)))...)).)))..))))...... ( -32.70) >consensus CUCUCCAUGGCCCGCGAGAAGGGCUUCUUGCCACC___GCUGCCCAUCGCACCGCCGCCCUCCGUCUCAUCCGCGUCGCGUACGUAGAUGGGACCCAGGGUGUCGUUCAUGCCGAACUUC .......((((..((((...((((.................)))).))))..((.((((((..((((((((.((((.....)))).))))))))..)))))).)).....))))...... (-27.22 = -29.95 + 2.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:04 2006