Locus 911

Sequence ID X_DroMel_CAF1
Location 2,543,508 – 2,543,609
Length 101
Max. P 0.563335
window1489

overview

Window 9

Location 2,543,508 – 2,543,609
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.30
Mean single sequence MFE -39.44
Consensus MFE -29.92
Energy contribution -30.28
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.57
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.563335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2543508 101 + 22224390
AGCCGGGAUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC
....(.(((((..((((.((((.(((((.....))))))))).(((((((.(...------.)((((..((....))...)))).)))).)))...))))))))).) ( -37.70)
>DroSec_CAF1 6558 101 + 1
AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUACAGCGUCGC
.((.(.((((..(..((.((((.(((((.....)))))))))....((((.(...------.)((((..((....))...)))).)))).))..)...)))).).)) ( -35.70)
>DroSim_CAF1 6629 101 + 1
AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA------ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC
.((.(.((((((((....((((.(((((.....))))))))).(((((((.(...------.)((((..((....))...)))).)))).))).)))))))).).)) ( -42.10)
>DroEre_CAF1 6650 92 + 1
AGCUGCGCUGCACUGCGAGUGCAUAACGACAUCCGCUGGCGGAGCGGCG---------------GGAGAACCUAGGCACAUCGCGCCGCACGUGAAUGCAGCUCAGU
.((((.((((((((((.((((.((......)).)))).)))).((((((---------------.((...(....)....)).)))))).......)))))).)))) ( -41.60)
>DroYak_CAF1 6769 107 + 1
AGCUGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCAACAGCAACGCGAGAGUCACGGCACAUCGCACUGCACGUGAAUGCAGCGUCGU
.((.(.((((((((....((((.(((((.....))))))))).(((((((.(....)......((((..((....))...)))).)))).))).)))))))).).)) ( -40.10)
>consensus
AGCCGGGCUGCAUUGCGACUGCAUAACGACAUCCGUUGGCGGAGCGGCAGAGGCA______ACGCGAGAGCAAAAGCACAUCGCACUGCACGUGAAUGCAGCGUCGC
.((.(.(((((((((((.........((...((((....)))).))((((.............((....))....((.....)).)))).))).)))))))).).)) (-29.92 = -30.28 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:03 2006