| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,536,934 – 2,537,034 |
| Length | 100 |
| Max. P | 0.873573 |
| Location | 2,536,934 – 2,537,034 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.01 |
| Mean single sequence MFE | -35.66 |
| Consensus MFE | -31.82 |
| Energy contribution | -31.62 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2536934 100 - 22224390 GCCCUCGCAUCCGAUCAGGGCUCAAAUGGAGCCGAACAACAACGACAAUAGGAUGGCCAAUGGCCAUGCGGCGGACGGGGAGAAUCUGGAGAAUCCAGAU ..(((((..((((.((..(((((.....))))).................(.((((((...)))))).))))))))))))...((((((.....)))))) ( -39.50) >DroSec_CAF1 349 97 - 1 GCCCUCGCAUCCGAUCCGGGCUCAACUGGAGCCGAACAACAACGACAAUAGGAUGGCCAAUGGCCAUGCGGCGGACGGGGAG---CUGGAGAACCCAGAU ..(((((..((((..((.(((((.....))))).................(.((((((...)))))).))))))))))))..---((((.....)))).. ( -37.20) >DroSim_CAF1 352 97 - 1 GCCCUCGCAUCCGAUCCGGGCUCAGCUGGAGCCGAACAACAACGACAAUAGGAUGGCCAAUGGCCAUGCGGCGGACGGGGAG---CUGGAGAACCCAGAU ..(((((..((((..((.(((((.....))))).................(.((((((...)))))).))))))))))))..---((((.....)))).. ( -37.20) >DroEre_CAF1 352 97 - 1 GCCCUCGCAUUCGAUCAGGGCUCAACUGGAGCCGAACAACAACGACAAUAGAAUGGCCAACGGUCAUGCGGCGGACGUGGAG---CUGGACAACCCAGAU ..(..(((.((((.((..(((((.....))))).................(.((((((...)))))).))))))).)))..)---((((.....)))).. ( -26.80) >DroYak_CAF1 358 100 - 1 ACCCGCGCAUCCAAUCCGGGCUCUACUGGAGCCGAACAACAACGACAAUCGGAUGGCCAACGGUCAUGCGGCGGACGUGGAGCAUCUGGAGCACCAGGAU ......((.((((.(((((((((.....)))))...............(((.((((((...)))))).)))))))..)))))).(((((....))))).. ( -37.60) >consensus GCCCUCGCAUCCGAUCCGGGCUCAACUGGAGCCGAACAACAACGACAAUAGGAUGGCCAAUGGCCAUGCGGCGGACGGGGAG___CUGGAGAACCCAGAU ..(((((..((((.((..(((((.....))))).................(.((((((...)))))).)))))))))))).....((((.....)))).. (-31.82 = -31.62 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:58 2006