Locus 901

Sequence ID	X_DroMel_CAF1
Location	2,514,028 – 2,514,118
Length	90
Max. P	0.901884

overview

Window 0

Location	2,514,028 – 2,514,118
Length	90
Sequences	4
Columns	102
Reading direction	reverse
Mean pairwise identity	72.96
Mean single sequence MFE	-21.43
Consensus MFE	-12.11
Energy contribution	-13.93
Covariance contribution	1.81
Combinations/Pair	1.05
Mean z-score	-1.95
Structure conservation index	0.57
SVM decision value	1.02
SVM RNA-class probability	0.901884
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2514028 90 - 22224390
------------GGUUAAGGAACAUCAUCGCCGCAUUACUGCGAAUAAGGGGAUAGUCCGCAAGUCUUAUUUAUUUAAAUAAGAUUGAGUAGUUAUCCAAGA
------------((.((((((..(((..(..((((....)))).....)..)))..)))((.((((((((((....))))))))))..))..))).)).... ( -20.00)
>DroSec_CAF1 12362 71 - 1
-------------------------------CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA
-------------------------------.(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... ( -19.50)
>DroSim_CAF1 12314 71 - 1
-------------------------------CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA
-------------------------------.(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... ( -19.50)
>DroEre_CAF1 12912 95 - 1
AAGGUGUUUCGAGGAUAAGGAACA---UCGCCGCAUUACUGCGGAUAAGGGGAGAGUCCGCAAGUCGUA----UUUAAAUGAGAUUGACUCGUUUGCAAAGA
..((((((((........))))))---))...((((.(((((((((.........)))))).))).)).----...(((((((.....)))))))))..... ( -26.70)
>consensus
_______________________________CGCAUUACUGCGAAUAAGGGGAGAGUCCGCAAGUCUUAUUUAUUUAAAUGAGAUUGAGUAGUUUGCCAAGA
................................(((..(((((......(.((.....)).).((((((((((....))))))))))..))))).)))..... (-12.11 = -13.93 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:37 2006