Locus 900

Sequence ID X_DroMel_CAF1
Location 2,512,288 – 2,512,406
Length 118
Max. P 0.780265
window1459

overview

Window 9

Location 2,512,288 – 2,512,406
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.32
Mean single sequence MFE -30.28
Consensus MFE -22.96
Energy contribution -23.60
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.56
SVM RNA-class probability 0.780265
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2512288 118 - 22224390
UCCACAGUUCCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAACAACAACGAGCGCAUAGAACAGCAUAAAAUAGAA
......((((.((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))...))))).))).)).)))).............. ( -27.80)
>DroSec_CAF1 10726 115 - 1
UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAA---CAACGAGCGCAUAGAACAGCAUAAAAUAGAA
....(((((..((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))---))))).))).))..)))))............ ( -31.50)
>DroSim_CAF1 11559 115 - 1
UCCACUGUUCCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA--CAA---CAACGAGCGCAUAGAACAGCAUGAAAUAGAA
....((((((.((...(((.(((((.(((.(((((((((.....)))))))..............(((....)))...)).--)))---))))).))).)).))))))............ ( -32.80)
>DroEre_CAF1 11125 116 - 1
UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGGCAGCGCCAUCUGUUGGCCACCUCGACAACCGCGCGAAAGUGAAAGUUU-CAA---CAACGAGCGCAUAGAACAGCAUAAAAUAGAA
....((((((.......((((((.....))).))).((((....((((((..........(((..(((....)))...))))-)))---))....))))...))))))............ ( -28.00)
>DroYak_CAF1 12374 101 - 1
UCCACUGUUUCAACAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAGCAACCGCGCGAAAGUGAAAGUUCGCAU---CGACGAGCGCAUAGA----------------
....((((((((....((((.((((((.....(((((((.....)))))))......)))))).).)))....)))).(((((...---...)))))..)))).---------------- ( -31.30)
>consensus
UCCACUGUUUCAUCAACGCCUGUUGCUUGCACGCCAGCACCAUCUGUUGGCCACCUCAUCAACCGCGCGAAAGUGAAAGUA__CAA___CAACGAGCGCAUAGAACAGCAUAAAAUAGAA
....((((((......(((.(((((.......(((((((.....)))))))..............(((....)))..............))))).)))....))))))............ (-22.96 = -23.60 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:36 2006