Locus 9

Sequence ID X_DroMel_CAF1
Location 26,004 – 26,124
Length 120
Max. P 0.666139
window10

overview

Window 0

Location 26,004 – 26,124
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -29.00
Consensus MFE -25.39
Energy contribution -26.20
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.88
SVM decision value 0.28
SVM RNA-class probability 0.666139
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 26004 120 - 22224390
CAGCUUACGAUGUCCAUCGACAAGUUCUACAAUAAAAGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUCGAUUCAAUGGGCAACCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU
.......((((....))))....(((((.((((...((....((((.....)))).......(((((((((((.((.(((....))).)))))))....)))))))).)))).))))).. ( -28.70)
>DroSec_CAF1 13171 120 - 1
CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAACGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUUAGGAACAU
.......((((....))))....(((((..............((((.....))))..(((((((((((.((..(((((.(((....))).))))).)).)))))...))))))))))).. ( -28.80)
>DroSim_CAF1 13465 120 - 1
CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAACGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUUAGGAACAU
.......((((....))))....(((((..............((((.....))))..(((((((((((.((..(((((.(((....))).))))).)).)))))...))))))))))).. ( -28.80)
>DroYak_CAF1 7666 120 - 1
CAGCUUGCGAUGCCCAUCGACAAGUUCCACAAUAAAAGAAUUACGCACCAUUCGUCUCAAAUUUCGAUUUGAUUCAAUUGGCAGCCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU
....(((((((....)))).)))(((((.((((....((((........)))).........((((((.((..(((((..((....))..))))).)).))))))...)))).))))).. ( -29.70)
>consensus
CAGCUUACGAUGCCCAUCGACAAGUUCCACAAUAAAAGAAUUACGCACCAUGCGUCUUAAAUUUCGAUUUGAUUCAAUGGGCAGCCGCUGAUUGACCACAUUGAACUGAUUGAGGAACAU
.......((((....))))....(((((.((((.........((((.....)))).......((((((.((..(((((.(((....))).))))).)).))))))...)))).))))).. (-25.39 = -26.20 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:04 2006