Locus 896

Sequence ID X_DroMel_CAF1
Location 2,510,147 – 2,510,264
Length 117
Max. P 0.707979
window1452

overview

Window 2

Location 2,510,147 – 2,510,264
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.41
Mean single sequence MFE -31.62
Consensus MFE -21.70
Energy contribution -21.06
Covariance contribution -0.64
Combinations/Pair 1.22
Mean z-score -2.16
Structure conservation index 0.69
SVM decision value 0.37
SVM RNA-class probability 0.707979
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2510147 117 - 22224390
AAUCAAAAAUAAUAUAAAACGCUUAGCCAAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACGUUUCCCUGUUAAUUGGGAACGGGAAACAGAGUGAAAUGGGACUGGGGGU
........(((((((...((((...((((((.(....)))))))...))))))--))-)))(((.(((.((((((((((((..(((....)))..))))).).))))))..)))...))) ( -30.80)
>DroSec_CAF1 8697 117 - 1
UGCCAAAAAUAAUAUAAAAAGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAACAGAGUGAAAUGGGACUGGGGGU
..(((.....((((((....((...(((.((((....)))))))...)).)))--))-)((.(((..((((((((((((((.......)))))))))..)))))...))).))))).... ( -31.50)
>DroSim_CAF1 9569 117 - 1
AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU--GU-UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAGCCGAGUGAAAUGAGACUGGGGGU
........(((((((...((((...(((.((((....)))))))...))))))--))-)))(((........(((((((((.......)))))))))((.(((........))).))))) ( -29.90)
>DroEre_CAF1 9097 109 - 1
AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAUGUGAACUUUGGCCAUGUGUGU--GUGUGUGCUAAGUACUUUUCCCUGUUAGUUGGGAACGGGGAAGAGA---------GAGUGGGGGU
...........(((((..((((...((((((.(....)))))))...))))..--.))))).(((..(.((((((((((((.......)))))))))))).---------)..))).... ( -33.40)
>DroYak_CAF1 10341 109 - 1
AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGCCAUGUGUGUGUGUGUGUGCUAAGUACUUUUCUCUGUUAAUUGGGAACGGGGAAGAG-----------AGCGGGGGU
...........(((((..((((...(((.((((....)))))))...))))...)))))...((..((.((((((((((((.......))))))))))))-----------.))..)).. ( -32.50)
>consensus
AAUCAAAAAUAAUAUAAAACGCUUAGCCGAAAGUGAACUUUGGUCAUGUGUGU__GU_UGUGCUAAGUACUUUUCCCUGUUAAUUGGGAACGGGGAACAGAGUGAAAUG_GACUGGGGGU
.(((..............((((...((((((.(....)))))))...))))........((((...))))..(((((((((.......)))))))))....................))) (-21.70 = -21.06 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:30 2006