| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,509,617 – 2,509,727 |
| Length | 110 |
| Max. P | 0.698182 |
| Location | 2,509,617 – 2,509,727 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.63 |
| Mean single sequence MFE | -20.91 |
| Consensus MFE | -12.58 |
| Energy contribution | -13.33 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2509617 110 - 22224390 UCACG--ACGACUGCGAUUGUAAAAAUAA-AACGAAACACAAUAUGCAUAAAAAACAAAAAACACAGUGAGUCAACUCAUAA-------AGCGAAAGAGUGUUUGAAUGUAUUAUGUUAU ....(--(((..(((((((((........-........))))).))))......(((..((((((.(((((....)))))..-------..(....).))))))...)))....)))).. ( -19.09) >DroSec_CAF1 8167 106 - 1 UCACAAAACGACUGCGCUUGUAAAAAUAA-AACGGAUUACAAUUUGCAUAUAAA--UAAAAACACAGUGAGUCAACUCAUAA-------AGCGAAAGAGUUGUUGAAUGUGU----UUAU .((((.(((((((.((((((((((..(((-......)))...))))).......--..........(((((....))))).)-------))))....)))))))...)))).----.... ( -21.20) >DroSim_CAF1 9055 104 - 1 UCACA--GCGACUGCGAUUGUAAAAAUAA-AACGGAACACAAUUUGCAUAUAAA--CAAAAACACAGUGAGUCAACUCAUAA-------AGCGAAAGAGUGGUUGAAUGUGU----GUAU ..(((--(((....)).))))........-..............((((((((..--(((...(((.(((((....)))))..-------..(....).))).)))..)))))----))). ( -19.90) >DroYak_CAF1 9801 107 - 1 UCACA--ACGACUGCGAUUGUAAAAAUAAAAACGGAACACAAUUUGCAUAUAAA--CCAAAACACAGUGAGUCAACUCAUAAGGCGAAAAGCGAAAGAGUGGUUGU-----U----GUAU ..(((--((((((((((((((.................)))).)))))......--......(((.(((((....)))))...((.....))......))))))))-----)----)).. ( -23.43) >consensus UCACA__ACGACUGCGAUUGUAAAAAUAA_AACGGAACACAAUUUGCAUAUAAA__CAAAAACACAGUGAGUCAACUCAUAA_______AGCGAAAGAGUGGUUGAAUGUGU____GUAU ........(((((((((((((.................))))).))))..............(((.(((((....)))))...........(....).)))))))............... (-12.58 = -13.33 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:27 2006