Locus 893

Sequence ID X_DroMel_CAF1
Location 2,508,357 – 2,508,449
Length 92
Max. P 0.966986
window1449

overview

Window 9

Location 2,508,357 – 2,508,449
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 80.63
Mean single sequence MFE -16.04
Consensus MFE -11.70
Energy contribution -11.93
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.73
SVM decision value 1.60
SVM RNA-class probability 0.966986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2508357 92 + 22224390
AAAAAACUACUUGAGUGGAAUCUUGGUAAAGUUUAUUUACUAUACCCAGAAUAAUAUUGAUUUGGUUUUCUUGCUUUUCUACUCUAGUACUG
.......((((.(((((((((((.((((.(((......))).)))).))).............(((......))).)))))))).))))... ( -22.00)
>DroSec_CAF1 6893 69 + 1
AAAAAACUACUUGA-UGGAAUCUUGG-AAAGUUUAUUUACU--ACCCAGAAUAAUAU-------------------UUCUACUCGAGUACUG
.......(((((((-((((((((.((-..(((......)))--..))))).......-------------------))))).)))))))... ( -12.91)
>DroSim_CAF1 7799 69 + 1
AAAAAACUACUUGA-UGGAAUCUUGG-AAAGUUUAUUUACU--ACCCAGAAUAAUAU-------------------UUCUACUCAAGUACUG
.......(((((((-((((((((.((-..(((......)))--..))))).......-------------------))))).)))))))... ( -13.21)
>consensus
AAAAAACUACUUGA_UGGAAUCUUGG_AAAGUUUAUUUACU__ACCCAGAAUAAUAU___________________UUCUACUCAAGUACUG
.......(((((((.((((((((.((...(((......)))...)).)))..........................))))).)))))))... (-11.70 = -11.93 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:27 2006