| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,502,969 – 2,503,062 |
| Length | 93 |
| Max. P | 0.507952 |
| Location | 2,502,969 – 2,503,062 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.68 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -12.09 |
| Energy contribution | -11.87 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | 1.07 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2502969 93 + 22224390 GAAACAAAAUCGUGACGCGCCUGAUUACU---UUAUUUUUUGUGUCAACAGUGUGUGCAGUGUAAUGUGUCUCCAAA----------------AGAAAAAUAAAAA-UUAGAA ((.(((......(((((((...(((....---..)))...)))))))(((.((....)).)))..))).))......----------------.............-...... ( -13.70) >DroEre_CAF1 1723 99 + 1 GAAGCAAAUUCGUGACGCGCCCGAUUACUUCUUUAUUUUUUGUGUCAACAGUGUGUGCAGUGUAAUGUGUC--CCAAAGAAAACAAAAAA-----AAAUACA-------AAAA ((((.....(((.(......))))...)))).....(((((((((..(((.((....)).)))..(((...--.........))).....-----..)))))-------)))) ( -12.50) >DroYak_CAF1 2770 111 + 1 GAAGCAAAUUCGUGACGCGCCUGAUUACUUCUUUAUUUUUUGUGUCAACAGUGUGUGCAGUGUAAUGUGUC--CAAAAGAAAACCAACAAAAAAGAAAUAAUAAUAUAUAGAA ((.(((......(((((((...(((.........)))...)))))))(((.((....)).)))..))).))--........................................ ( -12.60) >consensus GAAGCAAAUUCGUGACGCGCCUGAUUACUUCUUUAUUUUUUGUGUCAACAGUGUGUGCAGUGUAAUGUGUC__CAAAAGAAAAC_AA_AA___AGAAAUAAAAA_A__UAGAA ((.(((......(((((((...(((.........)))...)))))))(((.((....)).)))..))).)).......................................... (-12.09 = -11.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:17 2006