| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,502,115 – 2,502,215 |
| Length | 100 |
| Max. P | 0.758377 |
| Location | 2,502,115 – 2,502,215 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.33 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.87 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2502115 100 - 22224390 AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGCGAGUGUGCGAGUGUGUGCGUAUUUGUUAGUACGCUGCGCCGGAAUUUCUCAUGUGUC .((......)).(.((((((...(((((((((((((((((..(..(....)..)..)))))).....))))))))))))))))).).............. ( -35.30) >DroEre_CAF1 822 82 - 1 AGCUAAUUUGCAUGCGGUGCGUAAGUAUGCUAGCUGCAUGUGUGU------------------GUGUGUUAGUGCGCUGCGCCGGAAUUUCUCGUGUGUC .........(((((((((((...(((..(((((((((((....))------------------))).))))))..)))))))).((.....)))))))). ( -24.80) >DroYak_CAF1 1939 100 - 1 AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGUGUCAGUGCAUUUGUAUGUGUAUUUGUUAGUGCGCUGCGCCGGAAUUUCUCAUGUGUC .((......))....((..((((((.((((.....))))(.(((.(((((((((..((........))..))))))))))))).......))))))..)) ( -31.90) >consensus AGCUAAUUUGCAUGCGGUGCGUGAGUGUGCUAGCUGCAUGUGUGU__GUGC___UGU_UG_GUAUUUGUUAGUGCGCUGCGCCGGAAUUUCUCAUGUGUC .........(((((((((((...(((((((((((.((....))....(((((........)))))..)))))))))))))))))........)))))... (-24.50 = -24.87 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:16 2006