| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 344,346 – 344,444 |
| Length | 98 |
| Max. P | 0.528643 |
| Location | 344,346 – 344,444 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -14.31 |
| Energy contribution | -16.27 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 344346 98 - 22224390 AAACAGCGCUUACGCAUAUCGCAAAUCGAUAUCGAAAUCGCAUCGGUG------UAUCGAUAAAUUUUUUGUUUAUUCCGCACGUGCCGCAGUAAAAUAAAUUU .....(((....((.((((((.....)))))))).....((((..(((------(...(((((((.....)))))))..))))))))))).............. ( -19.50) >DroSim_CAF1 8930 98 - 1 CAACAGCGCCUACGCAUAUCGCAAAUCGAUAUCGAAAUCGCAUCGGUG------UAUCGAUACAUUUUUUGUUUAUUUCGCACGUGCCGCAGUGAAGUAAAUUC .....(((....))).(((((...((((((..((....)).)))))).------...)))))........(((((((((((..........))))))))))).. ( -21.60) >DroEre_CAF1 11621 104 - 1 UAACAACGCCUCCAUACAUCGAAAAUCGAUAUCGGCAUCGAAUUAUGAUAUCGAUACCGAUAAACCUUUUGUUUAUUUCGCACGUGCCACAGUGAAGUAAACUU ..................(((.....)))((((((.(((((.........))))).))))))........(((((((((((..........))))))))))).. ( -24.60) >consensus AAACAGCGCCUACGCAUAUCGCAAAUCGAUAUCGAAAUCGCAUCGGUG______UAUCGAUAAAUUUUUUGUUUAUUUCGCACGUGCCGCAGUGAAGUAAAUUU .....(((....((.((((((.....))))))))....)))((((((((....)))))))).........(((((((((((..........))))))))))).. (-14.31 = -16.27 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:53 2006