Locus 879

Sequence ID X_DroMel_CAF1
Location 2,474,999 – 2,475,092
Length 93
Max. P 0.599532
window1429

overview

Window 9

Location 2,474,999 – 2,475,092
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.69
Mean single sequence MFE -28.95
Consensus MFE -21.13
Energy contribution -20.67
Covariance contribution -0.47
Combinations/Pair 1.31
Mean z-score -0.82
Structure conservation index 0.73
SVM decision value 0.13
SVM RNA-class probability 0.599532
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2474999 93 - 22224390
CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AUCAUUGAUA-----------------------
..(((.(((.(((((.((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))..)))))----.))).)))..----------------------- ( -28.80)
>DroPse_CAF1 5823 88 - 1
UUUUGUAGACUUUGCCCAGCAAGAGUUCAAAUGCUGCGGACUUAGUAAUGCUGGCUACCAGGAUUGGGGUAAGUUCACGCC--------CAUUGC------------A------------
....((..((((.((((.....((((((.........))))))..((((.((((...)))).))))))))))))..))((.--------....))------------.------------ ( -23.40)
>DroSec_CAF1 1407 93 - 1
CUUCAUUGACUUUGCUCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AACAUUGGUU-----------------------
..(((.((..((((((((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))).)))))----..)).)))..----------------------- ( -28.10)
>DroSim_CAF1 409 93 - 1
CUUCAUUGACUUUGCUCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA----AACAUUGGUU-----------------------
..(((.((..((((((((((...(.((((.((.(((((((((.........)))))).))).)))))).)..))))).)))))----..)).)))..----------------------- ( -28.10)
>DroEre_CAF1 1712 116 - 1
CUUCAUUGACUUUGCCCAACAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUAAUACACG----AUCCCUCAUAAAAAUGUAACAAGUCGUGUGCAC
....((((((.(..((((((....)))..(((.(((((((((.........)))))).))).))))).)..)))))))(((((----((....(((....)))......))))))).... ( -29.70)
>DroYak_CAF1 477 113 - 1
CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGCAACUCGGGCUACCAGGACUGGAGUGAGUUAAUGCUGCGUGAAUCACUGAG-----CAUCGCAAGCAA--UUCAC
...(((((((.(..((((((.(((((((.(((((((......)))).))).))))).))..).)))).)..))))))))....((((((..((..(-----(...)).))..)--))))) ( -35.60)
>consensus
CUUCAUUGACUUUGCCCAGCAGGAGUUCAAGUGCUGUGGCCUCAGUAAUUCGGGCUACCAGGACUGGAGUGAGUUGAUGCAGA____AUCAUUGAU________________________
...(((((((((...(((((.(((((((...(((((......)))))....))))).))..).))))...)))))))))......................................... (-21.13 = -20.67 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:08 2006