Locus 878

Sequence ID X_DroMel_CAF1
Location 2,458,803 – 2,458,900
Length 97
Max. P 0.928907
window1428

overview

Window 8

Location 2,458,803 – 2,458,900
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 70.84
Mean single sequence MFE -24.66
Consensus MFE -17.08
Energy contribution -17.22
Covariance contribution 0.14
Combinations/Pair 1.25
Mean z-score -1.35
Structure conservation index 0.69
SVM decision value 1.19
SVM RNA-class probability 0.928907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2458803 97 - 22224390
ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCCUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGGCUUGAAAAUUGAUCU-CCAUU
(((((....((((((....))))))(((((..........)))))...)))))(((.(((........((-----((...))))........)))))-).... ( -29.99)
>DroSec_CAF1 2873 85 - 1
ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCUUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGG------------UCU-CCAUU
.........((((((....))))))(((((..........)))))..(((..(.(((..(((.....)))-----..))).)------------..)-))... ( -22.20)
>DroSim_CAF1 3700 84 - 1
ACAUCAAUAAGGGUCUUCUGGCCCUGGGCAACGUGAUCAAUGCCUUGGGAUGUGAGUAUCUAUCAUUUAG-----CCACUGG------------UCU-CC-UU
.........((((((....))))))(((((..........))))).((((..(.(((..(((.....)))-----..))).)------------..)-))-). ( -22.40)
>DroEre_CAF1 18346 85 - 1
ACAUCAAUAAGGGCCUUCUUGCCCUGGGCAGCGUGAUUAAUGCCCUGGGAUGUGAGUAUUUGCCAUUUAG-----CCACUUG------------AUU-GUAAA
....((((((((((.......(((.(((((..........))))).)))..(((.((....)))))...)-----)).))).------------)))-).... ( -22.30)
>DroYak_CAF1 16749 90 - 1
ACAUCAAUAAGGGCCUUCUUGCCCUGGGCAACGUGAUUAAUGCCUUGGGAUGUGAGUAUUUGCCACAUCUCUCUGUAGCAUU------------GUU-AAAAG
..((((...(((((......))))).(....).))))((((((...((((((((.((....))))))))))......)))))------------)..-..... ( -26.40)
>DroAna_CAF1 17665 95 - 1
ACAUUAACAAGGGCCUCCUGGCACUUGGCAAUGUCAUCAACGCUCUGGGAUGUGAGUU---AGCUUUCCA-----GGAUUAGAUUACAGAUUUUUGUAACACU
(((((..((((.(((....))).))))..))))).........(((((((.((.....---.)).)))))-----))......((((((....)))))).... ( -24.70)
>consensus
ACAUCAAUAAGGGCCUUCUGGCCCUGGGCAACGUGAUCAAUGCCCUGGGAUGUGAGUAUCUAUCAUUUAG_____CCACUGG____________UCU_CCAUU
(((((....((((((....))))))(((((..........)))))...))))).................................................. (-17.08 = -17.22 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:07 2006