Locus 873

Sequence ID X_DroMel_CAF1
Location 2,453,331 – 2,453,438
Length 107
Max. P 0.500000
window1420

overview

Window 0

Location 2,453,331 – 2,453,438
Length 107
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.27
Mean single sequence MFE -30.53
Consensus MFE -19.44
Energy contribution -22.33
Covariance contribution 2.89
Combinations/Pair 1.08
Mean z-score -2.68
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2453331 107 + 22224390
AUGUAUGAGAAAUCGCAGGCAUUUCCAAG-------------GCAUUUGUUGUAUGUCAUAGGAAUGAAAUCAUACUUGCACAAGAUUUCAAUCAUAUUAUGCCCACAAAUCGAGCUACA
.((((.((....))...(((((((((..(-------------((((.......)))))...))))(((((((............)))))))........)))))............)))) ( -20.60)
>DroSec_CAF1 13780 118 + 1
ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG--UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA
.(((.((.(((((.(....))))))))..(((((((((((((((((.....)--)))))))))))(((((((............))))))).........))))).....)))....... ( -35.50)
>DroSim_CAF1 16237 118 + 1
ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG--UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA
.(((.((.(((((.(....))))))))..(((((((((((((((((.....)--)))))))))))(((((((............))))))).........))))).....)))....... ( -35.50)
>consensus
ACGAAUGAGAAAUCGCAGGCAUUUCCAAGGGGCAUUCUUAUGGCAUUUGUUG__UGCCAUAGGAAUGAAAUCACACUUGCACAAGGUUUCAAUCAUAUUAUGCCCACAAAUCGAACUACA
....((((((((((....(((...........(((((((((((((.........)))))))))))))..........)))....))))))..))))........................ (-19.44 = -22.33 +   2.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:59 2006