Locus 87

Sequence ID X_DroMel_CAF1
Location 344,002 – 344,121
Length 119
Max. P 0.798930
window117

overview

Window 7

Location 344,002 – 344,121
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.98
Mean single sequence MFE -46.67
Consensus MFE -18.02
Energy contribution -17.83
Covariance contribution -0.19
Combinations/Pair 1.48
Mean z-score -2.09
Structure conservation index 0.39
SVM decision value 0.61
SVM RNA-class probability 0.798930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 344002 119 + 22224390
UUCGUUGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGCCUCAGGAAAUCCUUGAGUUGUUGGAAGGGUAAAUCCUUGCACCCACCCAAUGAUUUCGCCAGCCAGUCGGCGAUGACCUC
.(((((((-(((.((......))))(((((.((.......((((((.....))))))(..((((..((((..........))))..))))..)....)))))))....)))))))).... ( -37.50)
>DroPse_CAF1 2290 117 + 1
UUUGCAGUCCUGGCUGACCAUGCCCGGCUGCGAACGCAGCUGGAACAGUCGCAUCAGUUGUGCCACCGGCAGCUCGUUG---CCGCGCAGGGAUGUGGCCAGCCAUUCUAUGAACACUUC
(((..((...((((((.......((((((((....))))))))....((((((((..((((((....(((((....)))---)))))))).))))))))))))))..))..)))...... ( -50.80)
>DroSim_CAF1 8582 119 + 1
UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUCAGGAAAUCCUUGAGUUGCUGGAAGGGUACAUCCUUGCACCCACCCAAUGAUUUCGCCAGCCAGCCGGCGAUGAUCUC
.(((((((-(((.((......))))(((((.((((...((((((((.....))))))))...))..((((.((....)).)))).............)))))))....)))))))).... ( -42.20)
>DroEre_CAF1 11275 119 + 1
UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUUAGGAAAUCCUUCAGUUGCUGGGUGGGUAAGUCCUCGCACCCACCCAACGAUGUCGACAGCCAGUCGGCGAUGACCUC
.(((((((-(((((...(.((((...)))).)..)))))))..(((....)))...((((.(((((((((..(....)..))))))))).))))((((((.....))))))))))).... ( -48.20)
>DroYak_CAF1 8730 119 + 1
UUCGUCGU-CUGAGUAACCCAGCCAGGCUGCGCCCUCAGGCUCAGGAAAUCCUUCAGCUGCUGGGUGGGCAAGUCUUUGCAGCCACCCAAUGACUGCGACAGCCAGUCGGCGACGACCUC
.(((((((-(((.((......))))((((((((..(((((((.(((....)))..))))..(((((((((((....))))..))))))).)))..))).)))))....)))))))).... ( -50.50)
>DroPer_CAF1 2271 117 + 1
UUUGCAGUCCUGGCUGACCAUGCCCGGCUGCGCACGCAGCUGGAACAGUCGCAUCAGUUGUGCCACCGGCAGCUCGUUG---CCGCGCAGGGAUGUGGCCAGCCAUUCUAUGAACACUUC
(((..((...((((((.......((((((((....))))))))....((((((((..((((((....(((((....)))---)))))))).))))))))))))))..))..)))...... ( -50.80)
>consensus
UUCGUCGU_CUGAGUAACCCAGCCAGGCUGCGCCCUCAGCCUCAGGAAAUCCUUCAGUUGCUGGAAGGGCAAAUCCUUGCACCCACCCAAUGAUGUCGCCAGCCAGUCGGCGAUGACCUC
.((((((..(((.......)))...(((((((((((....(((((.((.........)).))))))))))..(((.(((........))).)))...).)))))...))))))....... (-18.02 = -17.83 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:51 2006