| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,448,504 – 2,448,621 |
| Length | 117 |
| Max. P | 0.630153 |
| Location | 2,448,504 – 2,448,621 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.18 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -33.24 |
| Energy contribution | -32.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2448504 117 - 22224390 AAGUCCAGCGGCGUGCUCCAUGAAUGGGAAAUCCCCGGUUCACAGGGGAUCGUUUCAGGUGUUUAGGCCCCAAUACCCCAACCCACAACCCCCAGACAAUCGAAGCGCCCCGCUCAC--- ......(((((.((((((..((..((((..((((((........)))))).......((.(((..((........))..)))))......))))..))...).))))).)))))...--- ( -36.90) >DroSec_CAF1 9178 118 - 1 AAGUCCAGCGGCGCGCUCCAUGAAUGGGAAAUCCCCGCUUCACAGGGGAUCGUUCCAGGUGUUUAGGUCCCAAUAC--CAACCCACAAACCCCACGCAAUCGAAGUGCCCCGCUCACCAG ......(((((.((((((..((..((((..((((((........)))))).......((((((........)))))--)...........))))..))...).))))).)))))...... ( -37.80) >DroSim_CAF1 11515 118 - 1 AAGUCCAGCGGCGUGCUCCAUGAAUGGGAAAUCCCCGCUUCACAGGGGAUCGUUCCAGGUGUUUAGGUCCCAAUAC--CAACCCACAACCCCCACGCCAUCGAAGCGCCCCGCUCACCAG ......(((((.(((((.(.....(((((.((((((........))))))..)))))(((((...(((........--.........)))...)))))...).))))).)))))...... ( -39.23) >consensus AAGUCCAGCGGCGUGCUCCAUGAAUGGGAAAUCCCCGCUUCACAGGGGAUCGUUCCAGGUGUUUAGGUCCCAAUAC__CAACCCACAACCCCCACGCAAUCGAAGCGCCCCGCUCACCAG ......(((((.((((((.(((..((((..((((((........)))))).......((.(((...(........)...)))))......))))..).)).).))))).)))))...... (-33.24 = -32.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:50 2006