| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,442,747 – 2,442,857 |
| Length | 110 |
| Max. P | 0.569088 |
| Location | 2,442,747 – 2,442,857 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.44 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -13.63 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2442747 110 - 22224390 GUAUUCUAUAAAUGCUUCUUCUCUUUUCCGAGAUCUUAUUU----------CAUCCCAAUUCCCAUUAACUGAGCUGCCAAAGCUGCCUGUUCAGUCCAAUAGCAGUUCAGUACCAUAAA (((((.....)))))....((((......))))........----------.................((((((((((....((((......))))......))))))))))........ ( -22.10) >DroSec_CAF1 3642 120 - 1 GCAUUCUAUAAAUGCUUAUUUUCUUUUCAGAGAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGUUUGAGCUGUCCACUAGCAGUUCAAUACCAUUAA (((((.....)))))...((((((....))))))....................................((((((((.((((((.....)))).....)).)))))))).......... ( -19.90) >DroSim_CAF1 5795 120 - 1 GCAUUCUAAAAAUGCUUCUUCUCUUUACAGAAAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGCCUGAACUGUCCACUAGCAGUUCAAUACCAUCAA (((((((...........((((......))))((((((.((((......................)))).))))))...)))).))).((((((((......)))))))).......... ( -19.65) >consensus GCAUUCUAUAAAUGCUUCUUCUCUUUUCAGAGAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGCCUGAACUGUCCACUAGCAGUUCAAUACCAUAAA (((((.....)))))....((((......)))).....................................((((((((.((.((.(......).))...)).)))))))).......... (-13.63 = -13.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006