Locus 860

Sequence ID X_DroMel_CAF1
Location 2,442,467 – 2,442,587
Length 120
Max. P 0.662849
window1387

overview

Window 7

Location 2,442,467 – 2,442,587
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -48.53
Consensus MFE -48.03
Energy contribution -48.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.99
SVM decision value 0.27
SVM RNA-class probability 0.662849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2442467 120 + 22224390
CCCGGCGUAGUGCAUCCGCCACAGCAACCACUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCCUCGAACAGCAGCGCCUCC
...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... ( -49.40)
>DroSec_CAF1 3363 120 + 1
CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCAGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC
...(((((..(((....((....)).......((((..(((((((.(((((........))))).((((....))))))))..)))..)))).................))))))))... ( -46.80)
>DroSim_CAF1 5516 120 + 1
CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC
...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... ( -49.40)
>consensus
CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC
...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... (-48.03 = -48.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:30 2006