Locus 853

Sequence ID X_DroMel_CAF1
Location 2,425,861 – 2,425,978
Length 117
Max. P 0.650923
window1374

overview

Window 4

Location 2,425,861 – 2,425,978
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 86.42
Mean single sequence MFE -22.83
Consensus MFE -20.43
Energy contribution -19.77
Covariance contribution -0.66
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.89
SVM decision value 0.24
SVM RNA-class probability 0.650923
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2425861 117 + 22224390
UUUAUUCGAAACUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACACACACGCAACGCACUGUACUUGCUAUGGCAACUCUAUGGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU
................((((......(((((((...)))))))................((((((....(((((((.....)))))))....(......)))))))..))))..... ( -22.90)
>DroSim_CAF1 35589 106 + 1
----------AAUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACUCUCCCGAAACGCACUGUACUUGCUAUGGCAACUCUG-GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU
----------................(((((((...)))))))..........((....((((((..((((....))))....(-((..........))))))))).....)).... ( -23.50)
>DroEre_CAF1 71732 112 + 1
GUUAC----AAUUAAAACUUAAUUAAGUCUAAUUUAAUUAGGCUUACACUCCUGAAACGCACUGUACUUGCUAUGGCAACUCUG-GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU
.....----.......((((...((((((((((...)))))))))).............((((((..((((....))))....(-((..........)))))))))..))))..... ( -22.10)
>consensus
_UUA_____AAAUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACACUCCCGAAACGCACUGUACUUGCUAUGGCAACUCUG_GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU
................((((......(((((((...)))))))................((((((..((((....)))).(((........)))......))))))..))))..... (-20.43 = -19.77 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:19 2006