| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,420,399 – 2,420,514 |
| Length | 115 |
| Max. P | 0.711173 |
| Location | 2,420,399 – 2,420,514 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 90.30 |
| Mean single sequence MFE | -38.50 |
| Consensus MFE | -31.11 |
| Energy contribution | -31.30 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2420399 115 - 22224390 AGACCUUGGGCAGCGCGGUUUCCAGGGAGAUAAAUGCUGGCAAGGAUGUCCCUGAAAACCGGGACAGCAGGACUCGCUGUCUG-AUUAGAUAAUAAGC--GUCCGUUGGCAACAAUGU .......((((.((.((((((.((((((.((...((....))...)).)))))).))))))(((((((.......))))))).-............))--))))((((....)))).. ( -44.40) >DroSim_CAF1 29202 115 - 1 AGUCCUUGGAGAGCGCUGUUGCCAGGGCGAUAAAUGCUGGCAAGGAUGUCCCUGAAAACCGGGACAGCAGGACUCGCUGUCUG-AUUAGAUAAUAAGC--GUCCGUUGGCAACAAUGU .(((((((...((((.((((((....))))))..))))..)))))))(((((........)))))....((((.(..(((((.-...)))))....).--))))((((....)))).. ( -40.20) >DroEre_CAF1 66342 118 - 1 AGUCCUUGGAAAGCGCGGUUACCAGGGCGAUAAAUGCUGGCAAGGAUGUCCCUGAAAACUGGGACAGCAAAACUCGCUGCACGUAUUAGAUAAUAAGCCCGUUCGUUGGCAAGAAUGU ....((((...((((.((...)).((((((((..(((.(((.((..((((((........))))))......)).))))))..)))).........))))...))))..))))..... ( -31.10) >DroYak_CAF1 67218 116 - 1 AGACCUUGGAAAGCGCGGUUGCCAGGGAGAUAAAUGCUGGCAGGGAUGUCCCUGAAAACUGGGACAGCAGGACUCGUUGUUCGUAUUAGAUAAUAAGC--GUCCGUUGGCAACAAUGU .(((((((.......(((((..((((((.((...((....))...)).))))))..)))))(((((((.......)))))))...........)))).--)))(((((....))))). ( -38.30) >consensus AGACCUUGGAAAGCGCGGUUGCCAGGGAGAUAAAUGCUGGCAAGGAUGUCCCUGAAAACCGGGACAGCAGGACUCGCUGUCCG_AUUAGAUAAUAAGC__GUCCGUUGGCAACAAUGU .(.((.((((..((.(((((..((((((.((...((....))...)).))))))..)))))(((((((.......)))))))..............))...))))..)))........ (-31.11 = -31.30 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:18 2006