Locus 851

Sequence ID X_DroMel_CAF1
Location 2,417,830 – 2,417,937
Length 107
Max. P 0.512517
window1372

overview

Window 2

Location 2,417,830 – 2,417,937
Length 107
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 84.53
Mean single sequence MFE -24.42
Consensus MFE -13.38
Energy contribution -14.50
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.55
SVM decision value -0.04
SVM RNA-class probability 0.512517
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2417830 107 + 22224390
AAAAUCAUAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCUGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC-A
............-.(((...(.((....)).)(((((-((....(((((........))))).-.))))))).................................))).-. ( -25.60)
>DroSim_CAF1 25273 107 + 1
AAAAUCACAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCCGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC-A
............-.(((...(.((....)).)(((.(-((....(((((........))))).-.))).))).................................))).-. ( -21.00)
>DroEre_CAF1 63730 108 + 1
AAAAUCAUAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAUUUCGCCGGCGUUGGAAAAAAUACAAACAAUAAUUAAAAACUUUCCU-A
............-((((...(.((....)).).((((-((((....(((.....)))(((......)))))))))))............................))))-. ( -28.90)
>DroYak_CAF1 64660 107 + 1
AAAAUCAUACCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCCGGCGCUCGCAAAAAUACAAACAAUAAUUAAAAACUUUCCU-A
............-((((...(.((....)).)((.((-((((....(((.....)))(((...-..))))))))).))...........................))))-. ( -28.40)
>DroAna_CAF1 70858 96 + 1
U-AGGCAAGGCAGAAAAAAAAAAAGAAAGUCGGCCAACCGCCGUUGGUCAUUUUGGCGGCCA--------------GCGAAAAUACAAAUAAUAAUUAAAAACUUUACCCA
.-.((.((((.....................(((((((....)))))))(((((.((.....--------------)).)))))..................)))).)).. ( -18.20)
>consensus
AAAAUCAUAGCA_AGGACAACAAGGAAACUCGGCCAG_CGCCAUUGGUCAUUUUGGCGGCCAU_UCGCCGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC_A
.......................(((((...((((((......)))))).....(.((((......)))).)...............................)))))... (-13.38 = -14.50 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:17 2006