| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,416,034 – 2,416,141 |
| Length | 107 |
| Max. P | 0.585750 |
| Location | 2,416,034 – 2,416,141 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.64 |
| Mean single sequence MFE | -34.53 |
| Consensus MFE | -24.66 |
| Energy contribution | -24.83 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2416034 107 + 22224390 AAAUAUAGUCAAGCACACGCCAACAUUGUAGUGUGGCUGCACAGCGAGAAGUUGCGGGUAAUGUCGCAGUGUGACCCUGCUUGCGACAGCGUGUCGAAAAGUAGGGU .............(((((((((.(((....)))))))......((((...((((....)))).)))).)))))(((((((((.((((.....))))..))))))))) ( -38.70) >DroSec_CAF1 58068 105 + 1 AAAUACAGUCAAGCACACGCCAACAUUG--GUGUGGCUGCACAGCGAGAAGUUGGGGGUAAUGUCGCAGUGUGACCCUGCUAGCGACAGCAUGUCGAAAAGUAGGGC .......(((.(((.(((((((....))--))))))))((((.((((...((((....)))).)))).)))))))((((((..((((.....))))...)))))).. ( -39.70) >DroEre_CAF1 61963 94 + 1 AAAUACAGUC-----------AACAUUG--GUGUGGCUGCACAGCGAGAAGUUGCGGGUAAUGGCGCAGUGUGACCAUGCUCACGAUAACGUGUCGAAAAGUGGGGC .......(((-----------.((...(--((((((..((((.(((....((((....))))..))).))))..)))))))((((....)))).......))..))) ( -25.20) >consensus AAAUACAGUCAAGCACACGCCAACAUUG__GUGUGGCUGCACAGCGAGAAGUUGCGGGUAAUGUCGCAGUGUGACCCUGCUAGCGACAGCGUGUCGAAAAGUAGGGC .....(((((..((....))..((((....)))))))))((((((((...((((....)))).))))..)))).(((((((..((((.....))))...))))))). (-24.66 = -24.83 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:16 2006