| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,415,564 – 2,415,661 |
| Length | 97 |
| Max. P | 0.655246 |
| Location | 2,415,564 – 2,415,661 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 89.52 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -18.84 |
| Energy contribution | -18.65 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2415564 97 - 22224390 UUCAUCUAAUUGUGCUUUGAUUAGGUGUAAAAGGCAUGUUGGCCUAAUUGGCAGUAAAUGAAAUUGAUAUUGCAAAUGAAAAGCAUUUGUGGCUUGC ..((((((((((.....))))))))))....((((......(((.....)))...................(((((((.....))))))).)))).. ( -21.80) >DroSec_CAF1 57608 96 - 1 UUCACCUAAUUGUGCUUUGAUUAGGUGUAUAAGGAAUGCUGGCCUAAUUGGCAGUAACUGAAAUUGAAAUUGCA-AUGAAAAGCAUUUGUGGCUUGC ..((((((((((.....))))))))))....(.(((((((.(((.....)))..........((((......))-))....))))))).)....... ( -23.20) >DroEre_CAF1 61518 97 - 1 UUCAUCUAAUUGCACUUUGAUUAGGUGUAUAAGGCAUGCUGCCCUAAUUGGCAGUGACAGAAAUUGAUAUUGCUAAUGAAAAGCAUUUGCGGUUUGC ..(((((((((.......)))))))))......(((((((......((((((((((.(((...))).))))))))))....))))..)))....... ( -24.50) >DroYak_CAF1 62003 97 - 1 UUCAUUAAAUUGCACUUUGAUUAGGUGUAUAAGGCUUGCUGCCCUAAUUGGCAGUAACUGAAAUUGAUAUUGCAAAUGAAGAGCAUUUGUGGUUUGC ...(((((..(((((((.....)))))))...((.((((((((......))))))))))....)))))((..((((((.....))))))..)).... ( -26.40) >consensus UUCAUCUAAUUGCACUUUGAUUAGGUGUAUAAGGCAUGCUGCCCUAAUUGGCAGUAACUGAAAUUGAUAUUGCAAAUGAAAAGCAUUUGUGGCUUGC ..(((((((((.......)))))))))....((((.(((((.((.....)))))))...............(((((((.....))))))).)))).. (-18.84 = -18.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:15 2006