Locus 847

Sequence ID X_DroMel_CAF1
Location 2,410,235 – 2,410,344
Length 109
Max. P 0.576784
window1367

overview

Window 7

Location 2,410,235 – 2,410,344
Length 109
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 67.28
Mean single sequence MFE -30.00
Consensus MFE -9.83
Energy contribution -9.92
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -1.82
Structure conservation index 0.33
SVM decision value 0.09
SVM RNA-class probability 0.576784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2410235 109 + 22224390
UGCUCGGCUGCUAGCGAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGCAAAAAAAAAA---AAUUGGCAUAGGCAAUUGCCCAAUU--GAUUU-
......((((..((((((((..((((((....((....))....))))))...))))))))....))))..........---((((((((........)).))))))--.....- ( -31.80)
>DroPse_CAF1 79865 90 + 1
UGCUCAGAUGCUCGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCACGCUACGAA----------GG---------CAGAAGCAGCGUCA-----AGCAGUGUACAAA-
((((..((((((.((....(((((((......((....))..(((((((....))))))).----------))---------))))))))))))).-----)))).........- ( -36.70)
>DroSim_CAF1 18663 102 + 1
UGCUCGGCUGCUAGCCAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGCAAA----------AAUUAGCAGAGGCAUUCGCCCAAUU--GAUUU-
......((((..(((.((((..((((((....((....))....))))))...)))).)))....))))..(----------((((((..(.(((....))))..))--)))))- ( -25.80)
>DroEre_CAF1 56353 103 + 1
UGCUCGGCUGCUAGCCAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGC---A---AAA---AAUUAGCAGAGGCAAUUUCCCAAUU--AAUUU-
((((...(((((((...((...((((((....((....))....)))))).)).....(((.....)))---.---...---..))))))).))))...........--.....- ( -25.40)
>DroWil_CAF1 79029 95 + 1
UGCUCAGAUGCUA--AAGAUUCUGUCAUAACGGCUUCGGCAUUCGUGACGCGCGCCUCGCACAA-------CG------CUUCAGCAGCAGCAGCA-----AAAAAAACAAAAAA
(((((...((((.--(((.....(((((....((....))....)))))(((.....)))....-------..------))).))))...).))))-----.............. ( -23.70)
>DroPer_CAF1 79352 90 + 1
UGCUCAGAUGCUCGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCACGCUACGAA----------GG---------CAGAAGAAGCGUCA-----AGCAGUGUACAAA-
((((..(((((((....))(((((((......((....))..(((((((....))))))).----------))---------)))))...))))).-----)))).........- ( -36.60)
>consensus
UGCUCAGAUGCUAGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCUCGCUUCGCAUUU_______AG_________AAGUAGCAGAGGCA_____ACAAUU__AAAAA_
((((....((((.....((..((((....))))..))......((.(((....))).))...........................))))..))))................... ( -9.83 =  -9.92 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006