| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,403,710 – 2,403,815 |
| Length | 105 |
| Max. P | 0.716671 |
| Location | 2,403,710 – 2,403,815 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.64 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2403710 105 - 22224390 GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAAAAACGAGGGCGGAAUGUAAAUGGGACAGGGA---UAUCUUCAUUGUUGUCAAAAGGAUAUAUGGAC ....(((....(((.((((.....((((........)))).....)))).)))..((((......(((((.((---(......))).)))))......)))).))).. ( -21.40) >DroSec_CAF1 46575 96 - 1 GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUAAAUGGGGCAGGGA---UAUCUUCAUUCUUGUCGAAGGGAU-------- ....((.....(((.((((.....((((........))))..-..)))).)))............((((((((---(......)))))))))...))...-------- ( -21.90) >DroEre_CAF1 49521 96 - 1 GAAACCAAAAAUGUGCUUGGAAAAUGGAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUAAAUGGGACUGAGA---AAUCAUCAUCCUUUGCAAAGGGAU-------- ....((.....(((.((((.....((.(........).))..-..)))).)))...((((((.(((..(((..---..)))...)))))))))..))...-------- ( -17.40) >DroYak_CAF1 49402 99 - 1 GAAACCAAAAAUGUGCUUGGAAAAUGUAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUGCAUGGGAUGGGGAUGGGAUCUGCAUCCUUGUCAAAAGGAU-------- ....((.....(((.((((.....((((........))))..-..)))).)))...((.(((.((((((.((((...)))).)))))))))))...))..-------- ( -23.50) >consensus GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAA_AACGAGGGCGGAAUGUAAAUGGGACAGGGA___UAUCUUCAUCCUUGUCAAAAGGAU________ ....((.....(((.((((.....((((........)))).....)))).)))............((((((((...........))))))))....)).......... (-13.93 = -14.55 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:10 2006