| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,381,612 – 2,381,709 |
| Length | 97 |
| Max. P | 0.972396 |
| Location | 2,381,612 – 2,381,709 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.04 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -18.80 |
| Energy contribution | -19.47 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2381612 97 - 22224390 AGGUGCUCGGGCCAUGCACAUUUGGCCCACAUACCAUUUAUCACACUGCGAAAAAUCACGACUUAGUCAGUCGGCGGUUCUUUGCUCCACGAAAUGU .((((...((((((........))))))...))))............(((((.((((.(((((.....)))))..)))).)))))............ ( -29.90) >DroSec_CAF1 25402 97 - 1 AGGUGCUCGGGCCAUGCACAUUUGGCCCACAUACCAUUUAUCACACUGCGAAAAAUCACGACUAAGUCAGUCGGCGGCUCUUCGCGCCACUAAAGUU .(((((..((((((........)))))).................((((((....)).(((((.....)))))))))......)))))......... ( -31.90) >DroYak_CAF1 26643 75 - 1 AGGUGCUCGGGCCAUGCACAUUUGGCCCACAUUCCAUUUAUCACACUGCGAAAAAUAACUACUGAGUCAGUCGCC---------------------- .((.....((((((........)))))).....))............((((....(.(((....))).).)))).---------------------- ( -18.40) >consensus AGGUGCUCGGGCCAUGCACAUUUGGCCCACAUACCAUUUAUCACACUGCGAAAAAUCACGACUAAGUCAGUCGGCGG_UCUU_GC_CCAC_AAA__U .((((...((((((........))))))...)))).......................(((((.....)))))........................ (-18.80 = -19.47 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:09 2006