| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,354,298 – 2,354,397 |
| Length | 99 |
| Max. P | 0.999825 |
| Location | 2,354,298 – 2,354,397 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 70.47 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -15.66 |
| Energy contribution | -16.16 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.63 |
| SVM decision value | 4.17 |
| SVM RNA-class probability | 0.999825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2354298 99 - 22224390 AAACACUGAUCCCCACACAUCCCCACAUCCCCACACACACACGCAGCUGUCAGAGGUGGGAUCUG-----CGAU---AUAGGGCCCACCUUAGACGCCAGUAGAAAU ....((((...........................(......)..((.(((.((((((((..(((-----....---.)))..)))))))).)))))))))...... ( -23.30) >DroSim_CAF1 20136 91 - 1 AAACACUGAUCCC--------CCCACAUCCCCACACACACACGCCGCUGUCAGAGGUGGGAUCUG-----CGAU---CUAGGACCCACCUCUGGCGCCAGUAGGAAU ....((((.....--------..............(......)..((.((((((((((((.(((.-----....---...)))))))))))))))))))))...... ( -28.80) >DroEre_CAF1 20356 86 - 1 A-ACACUA--CCU--------CCCACAUCCCCACAC--AUACUCAGCUGUCACAGGUGGGAUCGA--------GAAACAACGACCCAUCUCUGAAGCCAGUAGAAAU .-......--...--------...............--.((((..(((.(((.(((((((.(((.--------.......)))))))))).)))))).))))..... ( -21.00) >DroYak_CAF1 20503 95 - 1 AAACCCUA--UCU--------CCAACAUCCCCACAC--AUACUCAGCUGUCAGAGAUGGGAUCGCCGCGGCGAUCUACUAUUUCUGACCUGUGAACCCAGUAGAAAU ........--...--------...............--...(.(((..(((((((((((((((((....))))))..)))))))))))))).).............. ( -26.80) >consensus AAACACUA__CCC________CCCACAUCCCCACAC__ACACGCAGCUGUCAGAGGUGGGAUCGG_____CGAU___CUAGGACCCACCUCUGAAGCCAGUAGAAAU .............................................(((((((((((((((.(((................))))))))))))))...))))...... (-15.66 = -16.16 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:00 2006