Locus 837

Sequence ID X_DroMel_CAF1
Location 2,334,557 – 2,334,647
Length 90
Max. P 0.628988
window1351

overview

Window 1

Location 2,334,557 – 2,334,647
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -28.73
Consensus MFE -19.66
Energy contribution -21.30
Covariance contribution 1.64
Combinations/Pair 1.21
Mean z-score -1.22
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.628988
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2334557 90 - 22224390
CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC
.................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10)
>DroVir_CAF1 1273 78 - 1
---UGAGCUUGUAUAAGGGCGGC---------CAAGAUUUCCCCUGCAUGGUCUUAUAUAUAUGUG---CAGGUGUGUUACCGCUACCGCGAA
---.....((((.....(((((.---------.((.((....((((((((............))))---)))).)).)).)))))...)))). ( -18.40)
>DroPse_CAF1 936 84 - 1
AAUACAA--GGUC---GGGCAGAGU----GUGAAAGACAUGCCCUGCGUGGUUUUCUAUAUAUGUGCUGCAGGUGUGUUACCGCUACUGCCGC
.......--((.(---((((((.((----(((.....))))).))))(((((.....((((((.((...)).)))))).)))))..))))).. ( -25.60)
>DroSim_CAF1 936 90 - 1
CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC
.................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10)
>DroEre_CAF1 1014 90 - 1
CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC
.................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10)
>DroYak_CAF1 1023 90 - 1
CUUACAAUCGGUACAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUUUAUUUGUG---CAGGUGUGUUACAGCCACUGCCGC
.................(((((((.....(((...((((((((.((((..(..........)..))---)))))))))).))).))))))).. ( -32.10)
>consensus
CUUACAAUCGGUUCAAGGGCGGUGUCUCCCUGAAGGACACGCCCUGCAUGGUUCUGUAUAUUUGUG___CAGGUGUGUUACAGCCACUGCCGC
........((((...((((((.(((((.......)))))))))))...(((((..(((((((((.....)))))))))...)))))..)))). (-19.66 = -21.30 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:57 2006