| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,328,674 – 2,328,779 |
| Length | 105 |
| Max. P | 0.861269 |
| Location | 2,328,674 – 2,328,779 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.74 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2328674 105 + 22224390 AGUUUCCACAGUCAACUGAUGGCGAUUAACGAUUUCGCCUUAUGAUUCGAUGUCAUUUCCGUUACAACACUGGCUAUACUAGCUUAGCUUGGAGCGGGCAAUAGA ........(((....)))..(((((.........)))))..(((((.....))))).((((((.(((....(((((...)))))....))).))))))....... ( -23.60) >DroSec_CAF1 26853 82 + 1 AGUUGCCAUAGUCAACUGAUGGCGAUUAACUAUUUCGCCCCAUGAUUCGCUGUCAUUUCUGUUACAACCCUGGCAAUACUAG----------------------- .(((((((..((.(((.((.(((((.........)))))..(((((.....))))).)).)))...))..))))))).....----------------------- ( -20.10) >DroEre_CAF1 29071 83 + 1 AGUUGCCACAGGCAACUGAUGGCGACUAACGAUUUCGCCUCAUUAUUCGAUGUCGUUUCCGUUACAACCCUGGCAAGACUAGC---------------------- (((((((((((....))).))))))))((((((.(((..........))).))))))............((((.....)))).---------------------- ( -25.50) >consensus AGUUGCCACAGUCAACUGAUGGCGAUUAACGAUUUCGCCUCAUGAUUCGAUGUCAUUUCCGUUACAACCCUGGCAAUACUAGC______________________ (((((((((((....))).)))))))).........(((..(((((.....)))))....((....))...)))............................... (-15.99 = -16.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006