Locus 830

Sequence ID X_DroMel_CAF1
Location 2,324,629 – 2,324,719
Length 90
Max. P 0.518266
window1343

overview

Window 3

Location 2,324,629 – 2,324,719
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.90
Mean single sequence MFE -15.92
Consensus MFE -12.82
Energy contribution -12.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.81
SVM decision value -0.03
SVM RNA-class probability 0.518266
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2324629 90 - 22224390
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC
.....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46)
>DroSec_CAF1 22813 90 - 1
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC
.....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46)
>DroSim_CAF1 25371 90 - 1
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC
.....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46)
>DroEre_CAF1 24819 85 - 1
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAA----------------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC
.....((((((.....((.((.((((..........----------------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.71)
>DroYak_CAF1 24870 120 - 1
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAUACCAAAACCAAACCAAAAGCAAAGCCAAUACCAAUGCCAAAACCUGAAACUGGAGAGCAUUCCCAUUCCCGUUCCCAUUUUCC
.........((((((.(((...(((((.................................)))))....(((((.....((.......))...))))).....))).))))))....... ( -21.51)
>consensus
AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA_________________AAACCAAUACCAAUGCCAA_ACCUGAAACCGGAGAGCAUUCCC____________AUUUUCC
.....((((((.....((.((.((((.........................................))))))))....))))))...((((....)))).................... (-12.82 = -12.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006