Locus 83

Sequence ID X_DroMel_CAF1
Location 333,032 – 333,152
Length 120
Max. P 0.596285
window112

overview

Window 2

Location 333,032 – 333,152
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.83
Mean single sequence MFE -44.00
Consensus MFE -39.88
Energy contribution -40.16
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.15
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.596285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 333032 120 + 22224390
UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGUCCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..(((.(((((((((((.......)))))..((((......)))).)))))).)))..))))).))))). ( -45.90)
>DroSec_CAF1 473 120 + 1
UUUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGUUGGGUGGAAACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..((((.((((.((((((...)))((((....))))...))).))))..)))).....))))).))))). ( -44.80)
>DroSim_CAF1 288 120 + 1
UUUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.((((((...)))((((....))))...))).))))).)))).....))))).))))). ( -45.80)
>DroEre_CAF1 481 120 + 1
UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGUACAAACAGUUGGUGGGUGAAAACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..((((.(((.((((((.......)))))).(((((....)))))))).)))).....))))).))))). ( -44.10)
>DroYak_CAF1 442 120 + 1
UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAAACCCUCCUCCGACAUCAAAAAUACGGCAUGCUGUACCGACAGAGGGUGGGUGAAUACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.(....).....(((((....)))))......))))).)))).....))))).))))). ( -39.40)
>consensus
UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU
..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.(((........(((((....)))))..))).))))).)))).....))))).))))). (-39.88 = -40.16 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006