Locus 829

Sequence ID X_DroMel_CAF1
Location 2,317,798 – 2,317,893
Length 95
Max. P 0.961291
window1342

overview

Window 2

Location 2,317,798 – 2,317,893
Length 95
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.98
Mean single sequence MFE -21.51
Consensus MFE -16.92
Energy contribution -16.68
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.79
SVM decision value 1.52
SVM RNA-class probability 0.961291
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2317798 95 - 22224390
CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCAUAACAAUAAAAAAAAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG
......(((((......)))))....((((.....((((.--------((...................)).))))....(((((....)))))..))))... ( -21.61)
>DroSec_CAF1 16149 92 - 1
CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG
......(((((......)))))....((((.....((((.--------((.............---...)).))))....(((((....)))))..))))... ( -21.79)
>DroSim_CAF1 16963 92 - 1
CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG
......(((((......)))))....((((.....((((.--------((.............---...)).))))....(((((....)))))..))))... ( -21.79)
>DroEre_CAF1 17763 100 - 1
CGAAAAUAGAUAAUAUGAUCUAAUAAAACUGAAAGAGCGGUCGGUCGGUCGCACAACAAUAAA---AAAGAGCGAUACAAAGGCGGAGCCGCCUCAGGUGGAA
......(((((......)))))......((((..(.((((((.(((.(((((...........---.....))))).....))).)).)))))))))...... ( -24.19)
>DroYak_CAF1 17572 92 - 1
CGAAAAUAGAUAAUAUGAUCUAAUAAAACUGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGAUACAAAGGCGGAGCCGCCUUAGGUGGGC
......(((((......)))))..............((.(--------((((...........---.....))))).(.((((((....)))))).)....)) ( -18.19)
>consensus
CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG________UCGCACAACAAUAAA___AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG
......(((((......))))).....(((......((((........))))............................(((((....)))))..))).... (-16.92 = -16.68 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006