| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,309,069 – 2,309,189 |
| Length | 120 |
| Max. P | 0.568669 |
| Location | 2,309,069 – 2,309,189 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.18 |
| Mean single sequence MFE | -31.89 |
| Consensus MFE | -26.61 |
| Energy contribution | -26.83 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2309069 120 - 22224390 UGGUUGACUUGGAAUUUGACUUGGAUUUCCCUACGACAUGAUGAUGACGGCACCUUUAGCUGAAUCACAGCCAAGUCUUGGUUGUCAGGCCAACAAGCUAUACCACCAAAUCAAAGAAAA ((((.(.((((......(((((((..............((.((((..((((.......)))).)))))).)))))))((((((....)))))))))))...))))............... ( -28.66) >DroSec_CAF1 7060 118 - 1 UGGUUGACUUGGAUUUUAA--UGGAUUUCCCUACGACAUGAUGAUGACGGCACCUUUAGUUGAAUCACUGUCAUGUCUUGGUUGUCAGGCCAACGAACUAUACCACCAAAUCUAAGUAAA ......((((((((((...--(((..........((((((((..(((((((.......))))..)))..))))))))((((((....)))))).........)))..))))))))))... ( -32.90) >DroSim_CAF1 7855 118 - 1 UGGUUGACUUGGAUUUUAA--UGGAUUUCCCUACGACAUGAUGAUGACGGCACCUUUAGCCGAAUCACUGUCAUGUCUUGGUUGUCAGGCCAACAAACUAUACCUCCAAAUCAAAGUAAA ...((((.(((((.....(--(((..........((((((((..(((((((.......))))..)))..))))))))((((((....))))))....))))...))))).))))...... ( -34.10) >consensus UGGUUGACUUGGAUUUUAA__UGGAUUUCCCUACGACAUGAUGAUGACGGCACCUUUAGCUGAAUCACUGUCAUGUCUUGGUUGUCAGGCCAACAAACUAUACCACCAAAUCAAAGUAAA ((((((((..(((..((......))..)))(((.((((((((..(((((((.......))))..)))..)))))))).)))..)))).))))............................ (-26.61 = -26.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:42 2006