Locus 824

Sequence ID X_DroMel_CAF1
Location 2,306,134 – 2,306,241
Length 107
Max. P 0.561793
window1334

overview

Window 4

Location 2,306,134 – 2,306,241
Length 107
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -32.62
Consensus MFE -20.56
Energy contribution -20.42
Covariance contribution -0.14
Combinations/Pair 1.23
Mean z-score -1.90
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.561793
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2306134 107 - 22224390
UGUUGAGUUCAAUGCGCUUGGCUUCUGUGGCCAGCUGCUGCUCCUUGCAGCGCAGUUCAGCCUCGCGGAUUUUGAAGUAGUUCAUUCGCUCUUCGAAGCUGUCC---GCA
.((((((.....((((((.((((.....))))))).(((((.....)))))))).))))))...(((((((((((((.(((......))))))))))...))))---)). ( -43.60)
>DroVir_CAF1 19327 107 - 1
UGUUCAGCUCAAUCUUCUUGGCCUCGGUGGCCAGCUGCUGCUCCUUGCAGCGCAGCUCCGCCUCCUUCACUUUGAAGUAGUUGAUGCGCUCCUCGUAGCUAUCC---CCC
.((((((((....((((..((....((.(((.((((((.(((......)))))))))..))).))....))..)))).)))))).))(((......))).....---... ( -32.80)
>DroPse_CAF1 6918 107 - 1
UGUUCAGCUCGAUGCGCUUCUUUUCGGUUGUUAGCUGCUGCUCCUUGCACCGCAGCUCUGCCUCCCGCACCUUGAAGUAGUUCAUCCGCUCCUCAUAGCCAUCU---CCA
((...(((..((((.(((.((((..(((....(((((((((.....)))..))))))..((.....)))))..)))).))).)))).)))...)).........---... ( -27.60)
>DroMoj_CAF1 9181 107 - 1
UGUUCACCUCGAUCUUCUUCGCCUCGGUGGCCAGCUGCUGCUCCUUGCAGCGCAGCUCUGCCUCCUUCACUUUGAAGUAAUUGAUGCGCUCCUCGUAGCUGUCG---CCU
.........(((......)))....((((((.(((((((((.....)))(((((..((......((((.....)))).....))))))).....))))))))))---)). ( -32.80)
>DroAna_CAF1 5416 110 - 1
UGUUCAGCUCGAUGCGCUUCGCCUCGGUGGCCAGCUGCUGCUCCUUGCACCGCAGCUCCGCCUCCCGCACCUUGAAGUAGUUCAUCCGCUCCUCGUAGUUGUCCUGCGCC
.(..((((((((.(.((...((...(((((..(((((((((.....)))..)))))))))))....))....((((....))))...)).).))).)))))..)...... ( -33.70)
>DroPer_CAF1 9491 107 - 1
UGUUCAGCUCGAUGCGCUUCUUUUCGGUUGUUAGCUGCUGCUCCUUGCACCGCAGUUCUGCCUCCCGCACCUUGAAGUAGUUCAUCCGCUCCUCAUAGCCAUCC---CCA
((...(((..((((.(((.((((..(((....(((((((((.....)))..))))))..((.....)))))..)))).))).)))).)))...)).........---... ( -25.20)
>consensus
UGUUCAGCUCGAUGCGCUUCGCCUCGGUGGCCAGCUGCUGCUCCUUGCACCGCAGCUCUGCCUCCCGCACCUUGAAGUAGUUCAUCCGCUCCUCGUAGCUAUCC___CCA
..........((((.(((((.....((.(((.(((((((((.....)))..))))))..))).))........)))))....)))).(((......)))........... (-20.56 = -20.42 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:41 2006