Locus 823

Sequence ID X_DroMel_CAF1
Location 2,305,273 – 2,305,369
Length 96
Max. P 0.668770
window1333

overview

Window 3

Location 2,305,273 – 2,305,369
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 86.35
Mean single sequence MFE -39.63
Consensus MFE -33.90
Energy contribution -34.55
Covariance contribution 0.65
Combinations/Pair 1.13
Mean z-score -1.68
Structure conservation index 0.86
SVM decision value 0.29
SVM RNA-class probability 0.668770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2305273 96 + 22224390
AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGU------GGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC
..(((((..(((((((((((..(.((((.....)))).)........((((.------..)))))))))))))))....)).)))................. ( -38.40)
>DroSec_CAF1 3248 102 + 1
AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC
..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80)
>DroSim_CAF1 4050 102 + 1
AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC
..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80)
>DroEre_CAF1 4476 102 + 1
AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAACGCCACCAUGAUCAACACCCACC
..(((......((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))......)))................. ( -40.80)
>DroYak_CAF1 4123 102 + 1
AAGUGCAAUCCGCCGCCGCCGAAAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC
..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80)
>DroMoj_CAF1 8325 83 + 1
----GCAAUCGGCUGUCGCCGAGAUGCAGAAGCUGCA---GGUGAGCG------------CUGCAGUUGCCGCUGCAAAUGCGAGCAUGUUGAACACGCAUC
----(((.(((((....)))))..(((((.(((((((---((....).------------))))))))....)))))..)))..((.((.....)).))... ( -33.20)
>consensus
AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC
....(((..(((((((((((....((((.....))))..........(((((.......))))))))))))))))....))).................... (-33.90 = -34.55 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:40 2006