Locus 817

Sequence ID X_DroMel_CAF1
Location 2,267,685 – 2,267,775
Length 90
Max. P 0.936943
window1320

overview

Window 0

Location 2,267,685 – 2,267,775
Length 90
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 67.69
Mean single sequence MFE -23.83
Consensus MFE -9.34
Energy contribution -9.34
Covariance contribution -0.00
Combinations/Pair 1.25
Mean z-score -2.10
Structure conservation index 0.39
SVM decision value 1.26
SVM RNA-class probability 0.936943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2267685 90 - 22224390
GGCAAACAUUUUCAAUUAA---AGCCG-----C---CG--------AGUAUA-------UAAAUUGCA--UUUGCGGCCGCUAAAGAGCCGCAAUUAAUA-CUGAUACCGCGCUACGAC
(((................---.)))(-----(---((--------.((((.-------...((((..--.((((((((......).))))))).)))).-...)))))).))...... ( -22.53)
>DroPse_CAF1 25937 99 - 1
GGCGAACAUUUUCAAUUAUGAGAAACGUGAGUG---CC--------AGUAUAC-UCGCACAACUGUCA--UUUGUGGCCGCUAAAGAGCCGCAAUUAAUAGCUGAUG------UGAGAC
(((.....((((((....))))))((....)))---))--------......(-(((((((.((((..--.((((((((......).)))))))...)))).)).))------)))).. ( -33.60)
>DroGri_CAF1 29429 96 - 1
UGC-AACAUUUUCAAUUAA---CUUUU-----UCUCCUCUUCUUCUUCUUGU-------UAUGUUGCAUUUCUGUGGUCGCUAAAUAGCCGCAAUUAAUA-CUCAUA------UCAGAC
(((-(((((...(((....---.....-----................))).-------.))))))))....((((((.........)))))).......-......------...... ( -14.21)
>DroSec_CAF1 22220 90 - 1
GGCAAACAUUUUCAAUUAA---AGCCG-----C---CC--------AGUAUA-------UAAAUUGCA--UUUGCGGCCGCUAAAGAGCCGCAAUUAAUA-CUGAUACCGCGCUACGAC
(((................---.)))(-----(---.(--------.((((.-------...((((..--.((((((((......).))))))).)))).-...)))).).))...... ( -20.23)
>DroPer_CAF1 27026 100 - 1
GGCGAACAUUUUCAAUUAUGAGAAACGUGAGUA---CG--------AGUAUACCUCGCACAACUGUCA--UUUGUGGCCGCUAAAGAGCCGCAAUUAAUAGCUGAUG------UGAGAC
..((....((((((....))))))((....)).---))--------.......((((((((.((((..--.((((((((......).)))))))...)))).)).))------)))).. ( -28.60)
>consensus
GGCAAACAUUUUCAAUUAA___AAACG_____C___CC________AGUAUA_______UAAAUUGCA__UUUGUGGCCGCUAAAGAGCCGCAAUUAAUA_CUGAUA______UAAGAC
.......................................................................((((((((......).)))))))......................... ( -9.34 =  -9.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:28 2006