| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,266,493 – 2,266,592 |
| Length | 99 |
| Max. P | 0.889161 |
| Location | 2,266,493 – 2,266,592 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Mean single sequence MFE | -42.02 |
| Consensus MFE | -26.45 |
| Energy contribution | -25.45 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.889161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2266493 99 - 22224390 GCGCUGAGGGGCCUGGCUCCGUUGGAUCCCUUUCUGGGCCAGCCGCGCUAUAUUGUAGGCUCGGGUGCAGGAGUUAACAAACUCAAGCAGCGUAGACUG ((((((((((..(..((...))..)..))))..(((.(((((((..((......)).))))..))).)))(((((....)))))...))))))...... ( -39.40) >DroVir_CAF1 31570 87 - 1 GCGCUGCGCGGUCUGCUGCCGCUGGAUCCGUUUCUGGAGCAGCCGCGCUAUAUGGCUGCCAC----GCAGC--------AGCUGCGGCAGCGCAAGCUG (((((((((((.(((((((..(..((......))..).(((((((.......)))))))...----)))))--------)))))).)))))))...... ( -49.80) >DroGri_CAF1 27872 87 - 1 GCGUUGCGCGGCCUGCUGCCACUGGAUCCGUUUCUGGAGCAGCCCCGCUAUAUGGCGGCCAC----ACAGC--------AGCUCAAGCAGCGACGACUG .(((((((.((((.(((((..(..((......))..).)))))...(((....))))))).)----.....--------.((....)).)))))).... ( -34.40) >DroSec_CAF1 20989 99 - 1 GCGCUGAGGGGCCUGGCUCCGUUGGAUCCCUUUCUGGGCCAGCCGCGCUACAUAGUGGGCUCGGGUGCAGGAGUUACCAAACUCAAGCAGCGCAGACUG ((((((((((..(..((...))..)..))))..(((.(((((((.((((....))))))))..))).)))(((((....)))))...))))))...... ( -44.50) >consensus GCGCUGAGCGGCCUGCCGCCGCUGGAUCCCUUUCUGGACCAGCCGCGCUAUAUGGCGGCCAC____GCAGC________AACUCAAGCAGCGCAGACUG ((((((((.((.(((((.(((..(((.....))))))))))))).)((......))..............................)))))))...... (-26.45 = -25.45 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:27 2006