| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,254,844 – 2,254,959 |
| Length | 115 |
| Max. P | 0.595642 |
| Location | 2,254,844 – 2,254,959 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.53 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -17.15 |
| Energy contribution | -18.53 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.595642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2254844 115 - 22224390 ACCUCUGCCGCGCCCUUAACCCCCUAACGCCCCUGCCUCG-GAGUCAGAA--UGCCAACGAAUUUUCGCACUGGCCCCGGGGCAGG--CAACUUUCUUUUGCGAAGGGCAAGCUGCAAGA ..((.(((.((((((((...............((((((((-(.(((((..--(((.((......)).)))))))).)))))))))(--(((.......)))).))))))..)).))))). ( -44.20) >DroPse_CAF1 21652 97 - 1 ACCUUU--UGCGCCUCCAACCCGCCA-------CGACUCGAGAAGGAGAAUCUGCCA-CAAA---UGGCACUGGCCGCGGGGCAAGGCCAA---------GCC-AGAGCAAGCUGCAAAA ....((--(((((((....(((((..-------...(((......)))....(((((-....---)))))......)))))...))))..(---------((.-.......)))))))). ( -30.60) >DroSec_CAF1 17692 115 - 1 ACCUCUGCCGCGCCCCUAACCCCCUAACGCCCCUGCCUCG-GAGUCAGAA--UGCCAGCGAAUUUUCGCACUGGCCCCGGGGCAGG--CAACUUUCUUUUGCGAAAGGCAAGCUGCAAGA ..((.(((.((....................(((((((((-(.(((((..--.....((((....)))).))))).))))))))))--...(((((......)))))....)).))))). ( -40.20) >DroPer_CAF1 22521 97 - 1 ACCUUU--UGCGCCUCCAACCCGCCA-------CGAUUCGAGACGGAGAAUCUGCCA-CAAA---UGGCACUGGCCGCGGGGCAAGGCCAA---------GCC-AUAGCAAGCUGCAAAA ....((--(((((((....(((((..-------.(((((........)))))(((((-....---)))))......)))))...))))..(---------((.-.......)))))))). ( -33.20) >consensus ACCUCU__CGCGCCCCCAACCCCCCA_______CGACUCG_GAGGCAGAA__UGCCA_CAAA___UCGCACUGGCCCCGGGGCAAG__CAA_________GCC_AGAGCAAGCUGCAAAA ...(((((.(((((((....((...............((........))...((((((......))))))..))....))))).................((.....))..)).))))). (-17.15 = -18.53 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:24 2006