| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,252,472 – 2,252,567 |
| Length | 95 |
| Max. P | 0.978025 |
| Location | 2,252,472 – 2,252,567 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.70 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.06 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.978025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2252472 95 + 22224390 CCAG----------UCUGCACCCACUGUGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCCAC----CCCUCGCU-------ACCUUGCUAUUUCGCCUCCCC-AUGCCAU ....----------...(((.....(((((((((((((((.....)))))))))))).)))........----.....((.-------.....))..............-.)))... ( -13.80) >DroPse_CAF1 18322 102 + 1 C--------------CGGCACCCACUGCGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCCCCGGGGCCAUUGCCACCCCUUCCCCAGCACCUUCUCCCACCC-UUGCCCU .--------------.((((.....(((((((((((((((.....)))))))))).)))))........((((.........)))).......................-.)))).. ( -24.20) >DroSec_CAF1 15357 95 + 1 CCAC----------UCUGCACCCACUGUGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCCAC----CCCUCGCU-------ACCUUGCUAUUCCGCCUCCCC-GUUCCAU ....----------...((......(((((((((((((((.....)))))))))))).)))........----.....((.-------.....))......))......-....... ( -13.40) >DroYak_CAF1 16304 97 + 1 CCACUCGGCAGUACUCUGCACCCACUGUGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCAUC----CCCUCGAU-------C------UU-UUCCCUUCCCCUCUUUC-- ....(((((((....))))......(((((((((((((((.....)))))))))))).)))........----....))).-------.------..-.................-- ( -17.30) >DroPer_CAF1 18999 102 + 1 C--------------UGGCACCCACUGCGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCCCCGGGGCCAUUGCCACCCCUUCCCCUGCUCCUUCUCCCACCC-UUGCCCU .--------------.((((.....(((((((((((((((.....)))))))))).)))))........((((.........)))).......................-.)))).. ( -23.90) >consensus CCA___________UCUGCACCCACUGUGGUUUUUGUUUGCCCAUCAGAUAGAAAUCUGCAUUACCCAC____CCCUCGCU_______CCCCUGCUACUUCGCCUCCCC_UUGCCAU .........................(((((((((((((((.....)))))))))))).)))........................................................ (-11.30 = -11.06 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:20 2006