Locus 81

Sequence ID X_DroMel_CAF1
Location 330,908 – 331,027
Length 119
Max. P 0.602719
window106

overview

Window 6

Location 330,908 – 331,027
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.07
Mean single sequence MFE -39.37
Consensus MFE -25.32
Energy contribution -25.55
Covariance contribution 0.23
Combinations/Pair 1.41
Mean z-score -1.33
Structure conservation index 0.64
SVM decision value 0.14
SVM RNA-class probability 0.602719
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 330908 119 - 22224390
-UUCAGACCUCCGCCACUGAGUGGCAGCAGUUUCUAGACCAAUGCUUCGAGUCCCUGGCCCUACUGGCCAACACCAGAGGUGCACACAUCGUUUUCGCACAGGUCUAUAACCACUGGUCA
-....((((...(((((...)))))((..(((..((((((..(((..(((.......(((((.((((......))))))).)).....))).....)))..)))))).)))..)))))). ( -39.90)
>DroVir_CAF1 119436 120 - 1
UAGCAAACACCGACAACGGAAUGGCAACAGUUUCUGGACCAGUGCUUCGAAUGCCUGGCCCUGCUGGCAAGCACACGCGGUGCACACAUCGUGUUUGCCCAAGUCUUUGCCCAUUGGUCC
.((.((((.(((....)))..((....))))))))(((((((((...((((.((.(((((.....)))..(((.((((((((....)))))))).))).)).)).))))..))))))))) ( -42.10)
>DroGri_CAF1 40586 120 - 1
UUGCAGACACCCACAACGGAGUGGCAACUGUUUCUGGACCAGUGCUUUGAGUGUCUGGCGCUGCUGGCGAGCACUCGCGGUGCACACAUCGUGUUCGCCCAGGUCUUUGCCCACUGGUCG
...((((.((((((......)))).....)).))))((((((((.....((((.....))))...((((((.((..(.((((.((((...)))).)))))..)).)))))))))))))). ( -44.50)
>DroWil_CAF1 2138 120 - 1
CAGCAGAGCCCCACCACAGAAUGGCAACAAUUUUUGGAUCAAUGUUUCGAAUGUUUGGCCCUUUUGGCUAGCACUCGCGGUGCUCAUAUCGUUUUUGCACAAGUCUUUGCCCAUUGGUCG
..(((((((.((.(((.(((.((....)).))).)))..........(((.((((.((((.....)))))))).))).)).)))).....((....)).........))).......... ( -29.00)
>DroMoj_CAF1 107793 118 - 1
--GCAGACGCCCACAACGGAAUGGCAACAGUUUCUGGACCAGUGCUUCGAGUGCCUGGCCCUGCUGGCGACAACACGCGGCGCCCACAUCGUCUUCGCUCAGGUCUUCGCCCACUGGUCA
--.((((.((((.....))..((....)))).))))((((((((...((((.(((((((.......(((......)))((((.......))))...)).))))).))))..)))))))). ( -42.50)
>DroAna_CAF1 2033 119 - 1
-UCCAGACUUCCGCCACCGAAUGGCAACAGUUCCUGGACCAAUGCUUCGAGACUUUGGCCCUCCUGGCCAAUACCCGCGGCCCCCACGUCGUCUUCGCACAAGUCUAUUCCCAUUGGUCG
-..((((((...((((.....))))...)))..)))((((((((.....(((((((((((.....)))))......(((((......)))))........)))))).....)))))))). ( -38.20)
>consensus
_UGCAGACACCCACAACGGAAUGGCAACAGUUUCUGGACCAAUGCUUCGAGUGCCUGGCCCUGCUGGCCAGCACACGCGGUGCACACAUCGUCUUCGCACAAGUCUUUGCCCACUGGUCG
................(((((((....))..)))))((((((((...((((..(((((((.....)))........((((((....)))))).......))))..))))..)))))))). (-25.32 = -25.55 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006