Locus 808

Sequence ID X_DroMel_CAF1
Location 2,248,230 – 2,248,321
Length 91
Max. P 0.954873
window1306

overview

Window 6

Location 2,248,230 – 2,248,321
Length 91
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.20
Mean single sequence MFE -22.70
Consensus MFE -18.91
Energy contribution -19.22
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.83
SVM decision value 1.45
SVM RNA-class probability 0.954873
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2248230 91 + 22224390
UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC-----------------------------UUGGUUCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA
...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..))))).............. ( -20.60)
>DroSec_CAF1 11147 80 + 1
UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC-----------------------------UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUG-----------
...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..)))))...----------- ( -23.40)
>DroEre_CAF1 11594 91 + 1
UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUAUUC-----------------------------UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA
...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..))))).............. ( -23.40)
>DroYak_CAF1 12129 120 + 1
UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUAUCAUUCUGUUCAUUCUGGGUCUUGGGUCUUGGGUCCUGCCACCAAACAAAUCGUGAGAAUGCAAAUCAGUCA
...(((((..((((..(((((.....)))))..((((((.(...((((..((((.(......).))))..)))).....).))))))........))))..))))).............. ( -23.40)
>consensus
UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC_____________________________UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA
...(((((..((((..(((((.....)))))((((((((.((....................................)).))))))))......))))..))))).............. (-18.91 = -19.22 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:16 2006